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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGGAGAGGCTATATGGAGTTCCTCTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACCGCGCTTAATGTGTGgtaagatctttgaaattcaatattatgattaagattgttctccctcctaaatgtagctgttagtaaaatgaatcttcatgtgatgtaacttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G05200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G05200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G031780_T02 (Zea mays), 5'ss of exon 5
CAATGGAGAGGCTATATGGAGTTCCTCTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACCGCGCTTAATGTGTGgtaag----atctttgaaattcaatattatg---------attaagattgttctccctcctaaatgtagctgttagtaaaatgaatcttcatgtgatgtaacttgcag----------
| ||||| ||  | ||||||||||| || |||||||| || ||||||||||| |||||| |   ||| ||    |   |  | || || |||||||| |||||||    |    ||  | |  || || |          |||||    ||| |   ||||     || |  ||    |        || |  |  || ||  ||||           
CTATGGAAAGATTGTATGGAGTTCCGCTTACTGATCTTGATTCTATAAGATCTCTTGTTCCTGATCCTGAGTTGACTTTAGTCACTGCCCTTAATGTCTGgtaagttgcactgctgtcacttcatcttgtatgatacaccattaactgagttttttttccttt-cataacctttgtagagcctttgttttaacttctgaaaaatgcaaaaaattacag

upper sequence: AT5G05200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G36520.1 (Glycine max), 5'ss of exon 6
CAATGGAGAGGCTATATGGAGTTCCTCTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACCGCGCTTAATGTGTGgtaagatctttgaaattcaatattatgattaagattgttctccctcctaaatgtagctgttagtaaaatgaatcttcatgtgatgtaacttgcag
| ||| | || ||||||||||||||||| ||||| || ||||| ||||| ||| | ||||| | ||| |||| ||||||||| || || || ||||||||||| || ||  ||||||  || ||    |||| ||  ||  |    |    | || |    || |   || ||||   | | |  |   ||||||
CTATGCAAAGACTATATGGAGTTCCTCTTACTGACCTAGACTCCATAAGTTCATTAGTTTCTAATCCAGAAACCAGCCTTATAACTGCTCTCAATGTGTGgtatga-ctccgaaattatattttgcagttaacatcctttacttctcct--tttaaca---agaactgtgtatctcggtataaaatg--ttgcag

upper sequence: AT5G05200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G38380.1 (Glycine max), 5'ss of exon 6
CAATGGAGAGGCTATATGGAGTTCCTCTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACCGCGCTTAATGTGTGgtaagatctttgaaattcaatattatgattaagattgttctccctcctaaatgtagctgttagtaaaatgaatcttcatgtgatgtaacttgcag
| ||| | || ||||||||||||||||| ||||| || ||||| ||||| ||| | ||||| | ||| |||| ||||||||| || || || ||||||||||| || || |||||||| || ||    |||  | |  | | | || |  |  |||   || ||  |     |||   | | |  |   ||||||
CTATGCAAAGACTATATGGAGTTCCTCTTACTGACCTAGACTCCATAAGTTCATTAGTTTCTAATCCAGAAACCAGCCTTATAACTGCTCTCAATGTGTGgtatga-ctctgaaattctattttgcagttagcaatcctatacttcttttaactagaactttgtcta-----tctcggtataaaatg--ttgcag

upper sequence: AT5G05200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv13s0067g03210.t01 (Vitis vinifera), 5'ss of exon 7
CAATGGAGAGGCTATATGGAGTTCCTCTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACCGCGCTTAATGTGTGgtaagatct----ttgaaattcaatattatgattaagattgttctccctcctaaatgtagctgttagtaaaat--gaatcttcatgtgatgtaacttgcag-----------------
||||| ||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| ||||| || | ||| ||| | || || |||||||| ||||| ||       ||| |  |  |  | || |      ||||| |   |  ||  | ||   | || ||| ||  ||||||| ||  | |  | ||                      
CAATGCAGAGGCTTTATGGAGTTCCTCTTACTGATCTAGACTCTATTAGTTCACTTGTTTCTAGTCCTGAGACCAGTCTTGTAACTGCCCTTAATGTATGgtaggactcaaacttggatctgcagttcataagctttcttgttttgattttta--tttattggctaataacatcagaatctt-ataagttcaatctcttcattgatatgtttctgcag