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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgtacatatctatatatctaatgtatgtttaggtttctgcaaatagagtctcataataatatgcccctcacttcttggttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G04895.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g53760.1 (Oryza sativa), 5'ss of exon 7
ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgt----acatatctatatatctaatgtat--gtttaggtttctgcaaatagagtctcataataatatgcccctcacttcttggttgcag--
|||||||||||  | ||  ||||  |||| |||||  | ||  |||||||||| || ||||| ||||||||||| || |||||||| |||||||||||||||    | ||  |  | | ||   || ||  | | || |       | || |  ||| | ||||  |  |  |   || |||||| |    
ACAAGTGGTATATTACTACGACGATTGCTCAGTGACAGAAACCTGAATGGAGTAACTCATGTATTTGTTGATGAAATACATGAAAGAGGCATGAATGAAGgttggaagattgcattgtttcctttgaatttgctgagatcgtctttattaaa--ctcctgataaagttgcattactttgttggtttctcag

upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G29910.1 (Glycine max), 5'ss of exon 6
ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgtacatatctatat----atctaatgt-----atgtttaggtttctgcaaatagagtctcataataa---tatgcccctcacttcttggttgcag----------
|| ||||||||  | || ||| || || | |||||||| ||   ||||||  | || ||||||||||||||||| ||||||||||| |||||||||||||||| ||  |||       ||||||  |     ||   |    |  ||| ||   ||| || ||  |    |||||    ||||  ||||||   |          
ACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAAACCCGAATGGTATAACCCATGTTTTTGTTGATGAAATTCATGAAAGAGGCATGAATGAAGgtagattcctaacggacaatctaacatcagtaataccttatataatgctaaagaagtgtcttagaagacttatgctttccactg-ttggtttttgttcttctcag

upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G24630.1 (Glycine max), 5'ss of exon 10
ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgtacatatctatat----atctaatgt-----atgtttaggtttctgcaaatagagtctcataataatatgcccctcacttcttggttgcag---------
|| ||||||||  | || ||| ||||| | |||||||| ||  |||||||  | || ||||||||||| ||||| ||||||||||| |||||||||||||||| ||   ||  |    ||||||  |     ||   |    |  ||| |||  ||| ||  |     ||||    ||||  | | ||  |          
ACCAGTGGTATATTACTTAGAAGGCTGTTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGgtagattcttaactgacaatctaacatcagtaataccttatatagtgctaatgaagtatctaagactcatgctttccactgttggtttttattcttcgcag

upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgtacatatctatatatctaatgtatgtttaggtttctgcaaatagagtctcataataatatgcccctcacttcttggttgcag
||||  || || ||  | |||||  || | | ||| |  | | | || || || || |||||  ||||||||||||| |||||| ||||||||||||||||||    ||| ||| ||| |     ||   |      |    |    | ||  |                             
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatttctcaaaaccgtgctgagcgtggtcttttttctttctcag----------------------------

upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ19043 (Selaginella moellendorffii), 5'ss of exon 7
ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgtacatatctatatatctaatgtatgtttaggtttctgcaaatagagtctcataataatatgcccctcacttcttggttgcag
||||  || || ||  | |||||  || | | ||| |  | | | || || || || |||||  ||||||||||||| |||||| ||||||||||||||||||    ||| ||| ||| |     ||   |      |    |    | ||  |                             
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatgtctcaaaaccgtgctgagcgtggtcttttttctttctcag----------------------------