1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTGTAATCAAACATAACGCAAATCAACGCTATGCAACCAGTGGAATCACTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGgttaggtgttcttcttaatgttaagatgaatctacacatcatagatcttctagatgctctgcactaatccacccacatttaagaatgaaatactgacatttagatttttgctatttctgcag
species | Arabidopsis thaliana |
transcript | AT5G04710.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAG GAGTTTGTGGTGAGAAACGATATGGGATGTGGTTCAACAATAGGACCTATAEST: gi|124987809|gb|EL060237.1|EL060237
genomic: CTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGgttaggtgtt ... atttctgcagGAGTTTGTGGTGAGAAACGATATGGGATGTGGTTCAACAATAGGACCTATA
EST: CTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAG GAGTTTGTGGTGAGAAACGATAEST: gi|86072735|gb|DR368492.1|DR368492
genomic: CTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGgttaggtgtt ... atttctgcagGAGTTTGTGGTGAGAAACGATA
EST: CTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAG GAGTTTGTGGTGAGAAACGATATGGGATGTGGTTCAACAATAGGACCTATA
genomic: CTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGgttaggtgtt ... atttctgcagGAGTTTGTGGTGAGAAACGATATGGGATGTGGTTCAACAATAGGACCTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGTAATCAAACATAACGCAAATCAACGCTATGCAACCAGTGGAATCACTTCTTTTCTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGgttaggtgttcttcttaatgttaagatgaatctacacatcatagatcttctagatgctctgcactaatccacccacatttaagaatgaaatactgacatttagatttttgctatttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG