1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAAGGTTCACGACTTAGAGAAAGTCTGCGAGCCATTGTTCTATCACTGGAAACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatcacatataacttctctttaactctctcactgtggcttgaacatttatattgaagaagaagaaaaaacaaatgactgtgttttttaactttaacaatggtaaaattgcag
species | Arabidopsis thaliana |
transcript | AT5G04590.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTEST: gi|125287375|gb|EL301460.1|EL301460
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTT
EST: TAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGGGTTTCTCAAEST: gi|116451400|gb|EG493992.1|EG493992
genomic: TAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCAA
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGAAACATACAAAGGAGTTTCTCAAEST: gi|124879287|gb|EH958724.1|EH958724
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCAA
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGAEST: gi|124880768|gb|EH959670.1|EH959670
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGA
EST: ACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAAACCCGCATG GGATTCGAGAAACTGAAGGAGEST: gi|164134583|gb|ES021903.1|ES021903
genomic: ACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAA-CCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAG
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGEST: gi|125026987|gb|EL099256.1|EL099256
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAG
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACAEST: gi|125014391|gb|EL086660.1|EL086660
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACA
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCAAEST: gi|125026751|gb|EL099020.1|EL099020
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCAA
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATEST: gi|124942754|gb|EL018989.1|EL018989
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGAT
EST: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCEST: gi|124788942|gb|EH878621.1|EH878621
genomic: AACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTC
EST: TACACAACCCGCATG GGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCAA
genomic: TACACAACCCGCATGgtaagtatca ... aaaattgcagGGATTCGAGAAACTGAAGGAGCTGATAGATACATACAAAGGAGTTTCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGTTCACGACTTAGAGAAAGTCTGCGAGCCATTGTTCTATCACTGGAAACTAGAGAGGCAAACTAAAGAATCATTTGGAGAATACACAACCCGCATGgtaagtatcacatataacttctctttaactctctcactgtggcttgaacatttatattgaagaagaagaaaaaacaaatgactgtgttttttaactttaacaatggtaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA