Sequence
atgc intronic sequence ATGC exonic sequenceTGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGgtaagatgcatcaaaagccgttgtcaccaatcaaatgatatggcagtaactctttaaatgtgcgattctctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G04510.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 7
TGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGgtaag------------atgcatcaaaagccgttgtcaccaatcaaatgatatggcagtaactctttaaatgtgcgattctctcag-----------------
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CGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtattatatgactgtgcacttagaaatctcagcatctattgtgttctatatcatt---tttatgcattgctaattgtttaaaaaaatataccttttcta
upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 7
TGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGgtaagatgcatcaaaagccgttgtcaccaatcaaatgatatggca------gtaactctt-taaatgtgcgattctctcag-------------------
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CGCAAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGAACTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTTATTGACCGCCTGTTGgttagtattatatgaccgtgcacttagaaatcccagcatatcatgttctatataatttttatgcattgctaattgtttaaaagaaatatcccttttctat
upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 8
TGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGgtaag-atgcatcaaaagccg-ttgtcaccaatcaaa---tgatatggcagtaact---ctttaaatgtgcgattctctcag------------------
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TGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCGAGAGATATCCGATTTCCAAATTACTTTTCCGATGAAGCTCGAGATCTCATTGACCGGCTATTGgtaagcacaacttaactgctggttagcttcagttaagaagtggtataacttcagctgatttttttttttccatatttcttttttcttacttattttgaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47831676|gb|CK121360.1|CK121360EST: ATCGACCGGTTGCTG GATACCGAGCCAAGCAGAAGGCCAGGTGCTGGCTCAGAAGGTTATGTTGCT
genomic: ATCGACCGGTTGCTGgtaagatgca ... attctctcagGATACCGAGCCAAGCAGAAGGCCAGGTGCTGGCTCAGAAGGTTATGTTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGgtaagatgcatcaaaagccgttgtcaccaatcaaatgatatggcagtaactctttaaatgtgcgattctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA