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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTTTGGCACTGTCCACCGTGCTGAGTGGCATGGCTCGgtaagaacttttttgtcagaatttacgcagctgaattttttttcgctctaaaaatttggttgtgacttttggatctgcttggtattataaaaggcaaagt...

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G07610.1 (Glycine max), 5'ss of exon 9
GTTCCTTTGGCACTGTCCACCGTGCTGAGTGGCATGGCTCGgtaag---aacttttttgtcagaatttacgcagctgaattttttttcgctctaaaaatttgg-ttgtgacttttggatctgcttggtattataaaaggcaaagt
|||| ||||| ||||| || |||||||||||| |||||||||||||   | || | |      |||| | || |   || |   |     | |     ||||  ||||  || ||  || |  || | |  || ||    |||| 
GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctctctcttaaattgatgctgtataaatcggtcagcttatggttgtttgaattgtttctgttaaattt--ttag-acaatgaataaaaaag-

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 7
GTTCCTTTGGCACTGTCCACCGTGCTGAGTGGCATGGCTCGgtaagaacttttttgtcagaatttacgcagctgaattttttttcgctctaaaaatttggttgtgacttttggatctgcttggtat---tataaaaggcaaagt
|||| ||||| ||||| || |||||||||||| |||||||||||||    | | | | | |||| | || |   || | ||  || ||   | | | |  || |     | ||  | |||   |     | ||  ||   ||| 
GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctctta-aattgatgctgtataaatgttactc-ctaacatagtattattatcctaataggcccagctcaatgcacatctagtagtacaag-