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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGgtaagttctttcttcatcaaacttaaaaaccttcaaacaaatctgatcaattgaaatctcatctccatgcttctccatttagagctgaaatgtggacctaatggacag

Basic information

species Arabidopsis thaliana
transcript AT5G02100.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 7
TCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGgtaagttctttcttcatcaaacttaaaaaccttcaaacaaatctgatcaattgaaatctcatctccatgcttc--tccatttagagctgaaatgtggacctaatggacag
| || || || ||||| ||||| || |||||||||||  |||| |||||||| ||||| |||||||| |||||||  || || |||||||||||||||||||| | |    ||    |  |||    |  || ||| |        | |||| | ||   |  |  ||| |||  ||  ||||||  |  | ||                
TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGgtatgataacactaatcctgactgtcta--ctgcaatcttcagccttgaattaatattgtaattttatgtttccttcgttttagaattacattgaatgttcc--------

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 7
TCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGgtaagttctttcttcatcaaacttaaaaaccttcaaacaaatctgatcaattgaaa--tctcatctccatgcttctccatttagagctgaaatgtggacctaatggacag
| || || || ||||| ||||| || |||||||||||||||||||||||||| ||||| |||||||| ||||| || || || ||||| |||||||||||||| | | ||    ||||||  |||      |||   ||  |||  ||  |||| |  ||   |  |||   |  ||  |||     |   |  | |   | ||| |   
TTGGGCGCACTTGGGTTGATTCTCCTGGAGAGATGGTCATGACGAACCTGACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatattggc-catcaa-ttta------ttcttgcatttcttgtccgttgacagctcctgttgccaaattattcagtttttcagtagtaacttgcttttatgcat--

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 7
TCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGgtaagttctttcttcatcaaacttaaaaaccttcaaacaaatctgatcaattgaaatctcatctccatgcttctccatttagagctgaaatgtggacctaatggacag----------------------------------------------------
| || || || ||||| ||||| || ||||||||||| ||||| |||||||| || || |||||||  ||| | || || || |||||||||||||| ||||| | | |||   ||||||  |||               |  |  ||| ||  | |   || |   |||||  | ||||   |      |  | |  || |  |                                                       
TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTTATGACAAACCTGACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatttggccatcaa-tttattcttgcatttgttgactttttcagtttcagtactatatatttgctta-ctatttgctggaagcgttggcagttattcaattctttttattgtcttatagttcgctcagtccggtttgtattgcttacatttcag

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S20_97V6.1 (Physcomitrella patens), 5'ss of exon 7
TCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGgtaagttctttcttcatca--aacttaaaaac----cttcaaacaaatctgatcaattgaaatctcatct--ccatgcttctccatttagagctgaaatgtggacctaatggacag------------------------------------------------------
| || ||||| ||||| ||||| ||||| || ||||||||||| || || || || || || ||||| |||||||||||||| ||||||   ||||| |||||| |   ||| ||  ||  | | |  || |     ||    |  |||   ||| |||   |   ||    |  |||  |||  |   | | | |||||| |  ||   | |                                                         
TTGGACGAACTTGGGTAGATTCCCCAGGCGACATGGTCATGACAAATCTCACAACAGGGGAGAAAGTTGTGCTTTACTTTCATCCATGTAATTGGTTCGGgtaattgtcttcgtcgccaccaccctcgaagcgttttttttcccttatcatttcatttgtgtttcgatgcaacagtgcgactctttagtgcggtcaaatgtagttctgcagcatgtctctaaacatgctcctttttcttcaatgcgtaatgctcccggtccttaatgcag

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ08612 (Selaginella moellendorffii), 5'ss of exon 7
TCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGgtaagttctttcttcatcaaacttaaaaaccttcaaacaaatctgatcaattgaaatctcatctccatgcttctccatttagagctgaaatgtggacctaatggacag
| ||  |||| ||| | || || || |||||    ||  |||| || || || ||||| ||||||||| | ||||| |||||||| ||||||||||||||||||  ||    |   ||    || |    | |   ||  | ||| |   ||| ||                                                    
TTGGCAGAACGTGGATAGACTCTCCCGGAGATTATGTTGTGACAAATCTCACGACTGGCGACAAAGTGATCCTTTATTTTCAACCCTGTGGCTGGTTTGGgtaaaatcagagtctttc---tttgatgtgcgtagtactta-ctgtttgtttgcaaag--------------------------------------------------