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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTCGGCGACCAACTTCTCAACCACTCAAACGCTTTCTCTCTCCTCCCTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATGCTCATCCATCAGgttcctatcatcctaactctcactatgttacatgtctcacaataattacactatgccattaatgattggtccaagttacatgctattatttatacggtac...

Basic information

species Arabidopsis thaliana
transcript AT5G01240.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01240.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 6
------------------------GGCTTTCGGCGACCAACTTCTCAACCACTCAAACGCTTTCTCTCTCCTCCCTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATGCTCATCCATCAGgttc-ctatcatcctaactctcactatgttacatgtctcacaataattacactatgccatt-----------aatgattggtccaagtta--catgctattatttatac-ggtac------------------------
                        ||||||||| ||| | ||  | |   | || |||||  |  |||| || || || |     |||||||||| |||||| || |||||||||||||||||||    || |  || |  |||   || |  |  |  |||     |  ||   ||    | |            || ||  |    |||||   || | | || ||| | | | | |                        
CCCGTCCGCCACGGCAGTCTACTGGGCTTTCGGTGACAATCTCTTGACGAAATCCAACGCGCTTGCTCTTCTTCCCAAGAACGCCTTCCGTGACATCGCCgtcattctcatgctcatccatcaggcaagcttttttctttcctcgagctcttctttacttcttcttcttcttcttcttcttcttcttcccgagaagaaagaaagaggaaagtttgccaagtttttctttcttctgattcctcgattctcgcgatggaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067802|gb|DR363559.1|DR363559
EST:     CTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATGCTCATCCATCAG                         TTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA
genomic: CTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATGCTCATCCATCAGgttcctatca ... ggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA
EST: gi|164212377|gb|EL981816.1|EL981816
EST:     TGCTCATCCATCAG                         TTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA
genomic: TGCTCATCCATCAGgttcctatca ... ggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA