1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTCCTTCACAGAGCGGCTGATCTTACATTAGTTCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAGgtgaagaaagatcatacattacatttttgtacaagctctatgattgttcaaaacttacattttcttcttctttttttcatatattgaag
species | Arabidopsis thaliana |
transcript | AT5G01220.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAG CTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATCEST: gi|86057508|gb|DR353265.1|DR353265
genomic: TCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAGgtgaagaaag ... tatattgaagCTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATC
EST: TCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAG CTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATCEST: gi|163996231|gb|ES114807.1|ES114807
genomic: TCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAGgtgaagaaag ... tatattgaagCTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATC
EST: CTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAG CTAATCAACTTCGACTTTGGAATAAAGGGTGTCGATTCAGAAAGCTTCAAT
genomic: CTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAGgtgaagaaag ... tatattgaagCTAATCAACTTCGACTTTGGAATAA-GGGTGTCGATTCAGAAAGCTTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCCTTCACAGAGCGGCTGATCTTACATTAGTTCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTGCAACTGCAGgtgaagaaagatcatacattacatttttgtacaagctctatgattgttcaaaacttacattttcttcttctttttttcatatattgaag
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG