1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCAAAGCCATCTGAGATGCCTTATGAGAAAGAGGAACTGCTTAATGCAGCTGTCTGCCGTGTAGACGCCCTTGAAGCTGAGCTCATAGCCACTAAGAAGgtaactgaataccatgttcaacaattgaaacccaccaaaattagaacctgagacgtttcacgttctctaaaaactgtttgttatttgaagcag
species | Arabidopsis thaliana |
transcript | AT4G39170.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAGCCACTAAGAAG GCTCTTTATGAAGCTCTGATGAGACAAGAAGAATTACTCGCTTACATTGACEST: gi|164002731|gb|ES155923.1|ES155923
genomic: TAGCCACTAAGAAGgtaactgaat ... tttgaagcagGCTCTTTATGAAGCTCTGATGAGACAAGAAGAATTACTCGCTTACATTGAC
EST: CATAGCCACTAAGAAG GCTCTTTATGAAGCTCTGATGAGACAAGAAGAATTACTCGCTTACATTGAC
genomic: CATAGCCACTAAGAAGgtaactgaat ... tttgaagcagGCTCTTTATGAAGCTCTGATGAGACAAGAAGAATTACTCGCTTACATTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAAGCCATCTGAGATGCCTTATGAGAAAGAGGAACTGCTTAATGCAGCTGTCTGCCGTGTAGACGCCCTTGAAGCTGAGCTCATAGCCACTAAGAAGgtaactgaataccatgttcaacaattgaaacccaccaaaattagaacctgagacgtttcacgttctctaaaaactgtttgttatttgaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG