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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATgtaattccgacttactcctccccctcttgtatttttgtctccatctagactttgaattctttgcgaataccgtactctgtgtatattgaaccggttcctgtgtttctgctgcag

Basic information

species Arabidopsis thaliana
transcript AT4G38930.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38930.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G114220_T01 (Zea mays), 5'ss of exon 7
ACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATgtaattccgacttactcctccccctcttgtatttttg---tctccatctagactttgaattctttgcgaataccgtactctgtgtatattgaaccggttcctgtgtttctgctgcag
|||  ||    || | |||||  |||||||| ||||| || || |||||| ||||||| |||||||| || ||||| |||||  | ||||||||||||||||||      |||     |   ||| |  |  | |||     ||  |  |    |       || |    || | | |||  |   |  ||      || |                
ACACTGTCCATGTAAAAAATGCGACTCTTCCCAAGGGCACATATGTGAAATTGCAACCTCACACAACTGATTTTCTGGATATTTCAAACCCGAAAGCCATgtaaggaaacctttaaaattgtcctataatgatcttgaaaattctcttcatttctcttggcattaggcgttatcattctcattacttgctgttaaattttccag-------------

upper sequence: AT4G38930.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 7
ACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATgtaa-ttccgacttactcctccccctcttgtatttttgtctccatctagactttgaattctttgcgaataccgtactctgtgtatattgaaccggttcctgtgtttctgctgcag
|||  |||   || | |||||| |||||||| |||||||| || || ||||| || ||||| |||||||||||  | |||||  | ||||| |||||||||| | ||    || |          |  |        ||    |    | || |  ||  ||    ||||   ||  ||||    |  ||   |  |||||              
ACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgttgctaataatctttattgctaggagaaggtaggtaaggtgtctcttgatg-ttcatcaatattttatgctgttgcaagagaggggaatcctg--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164212254|gb|ES166068.1|ES166068
EST:     CTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCAT                         CTTGGAGACCGC
genomic: CTGCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATgtaattccga ... tctgctgcagCTTGGAGACCGC