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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGATTCGCCATAAATGTCTCTCAGTCATTGGAAAGTTGATGTATTTCAGCAGTTCAGAAATGATTCAATCTCTAATTGGTGACACAAATATTTCGAGgtatgctgtttacgatataaattaagtttgacacgacagtgtgtgcaacttcttacatttttttcttcttatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G38600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G00530.1 (Glycine max), 5'ss of exon 7
GTACGATTCGCCATAAATGTCTCTCAGTCATTGGAAAGTTGATGTATTTCAGCAGTTCAGAAATGATTCAATCTCTAATTGGTGACACAAATATTTCGAGgtatgctgtttacgatataaattaagtttgacacgacagtgtgtgca-acttcttacatttttttcttcttatgtag---
|| |  |||| || |||||||| || ||||||||||| ||||||||||||||||   | || ||||| || ||| || |  |||  |||||||| || ||||||   |      |  |   ||    ||| | | |   | | || | | | ||||    || |   | | |||      
GTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTACTGAGTGTAACAAATATATCAAGgtatctagaacttcaattgggttgctgttg-ctctatgttctctgtagaatacttatgcattgtcactttgatgatatag

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G00600.2 (Glycine max), 5'ss of exon 7
GTACGATTCGCCATAAATGTCTCTCAGTCATTGGAAAGTTGATGTATTTCAGCAGTTCAGAAATGATTCAATCTCTAATTGGTGACACAAATATTTCGAGgtatgctgtttacgatataaattaagtttgacacgacagtgtgtgca---acttcttacattttt-ttcttcttatgtag
|| |  |||| || |||||||| || ||||||||||| ||||||||||||||||   | || ||||| || ||| |  |  |||  |||||||| || ||||||   |      |  |   ||    ||| | | |   | | || |   |  |  | |||| |   | |  | || |||
GTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaacttcaattgggttgctgttg-ctctatgttctctgtagaaaacttatgcattgtcactttgatgatatag