Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCGgtaaattgtctcatttaatcgagtaattttatatattttttggtccttagtttcatctcttaggtgttcgaacttggtttaaagattttgaatttggtgtatatag

Basic information

species Arabidopsis thaliana
transcript AT4G36920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36920.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0031g00220.t01 (Vitis vinifera), 5'ss of exon 7
AGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCGgtaaattgtctcatttaatcgagtaattttatatattttttggtccttagtttcatctcttaggtgttcgaacttggtttaaagattttgaatttggtgtatatag
 || || || ||||||||||| |||||||| |||||||| || || |||||||| ||||| |||||||| ||  | || |||||  |         ||       |   || |  ||| |  | | |  || ||   ||| || |     |   ||  | | |   ||  |  || |         |    |   
GGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCGgtgagtaatggaaagatgaatcgtttcacttctctagtgatcaacagtctctttatgcattggtgtgtattcaattagatcatgtctggcacaattctcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125262656|gb|EL276741.1|EL276741
EST:     GAACTCAATGCCG                         AGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCT
genomic: GAACTCAATGCCGgtaaattgtc ... gtgtatatagAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCT