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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctactaaataacatgttgatgtaaaaatgtcaaattactaagattattgtggtattgattatgatttctccag

Basic information

species Arabidopsis thaliana
transcript AT4G36210.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctactaa----ataacatgttgatgtaaaaatgtcaa-attactaagattattgt-ggtattgattatgattt-ctccag
|||  | ||||| ||||||||||||||||| ||    |||||||| || ||||| |||||||||||||||||||||||||||   |  ||        |||| |    | | | |   | | |  | | ||  || |  |||  ||||||  | ||| || |  |||
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagttatcagtttattagtagtgctgtgaatgatgttagtattg-ctgtgacttgcatcag

upper sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G37420.1 (Glycine max), 5'ss of exon 8
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctacta-aataacatgttgatgtaaaaatgtcaaattactaagattattgt-ggtattgattatgatttctccag------
|||  | ||| | |||||||||||||||||  |     ||||||| || |||||||||||||||||||||||||||||||||| || | |  |   ||  |  ||  | |   |   |  | |    | |  |||  | |||    ||  || | ||    |      
GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattccaggatgctagtacttttgtatggtatatttgagtagagatgtatatgattggtgccaatattgttgtcatatgctttag

upper sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 7
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctac-taaataacatgttgatgtaaaaatgtcaaattac------taagattattgt-ggtattgattatgat-ttctccag
|||  | ||||| |||||||||||||||||  | |   ||||||| || ||||||||||||||| |||||||||||||||||| || | |       |  |  ||  | ||  |   | || |         || ||||  ||    ||||| || |||| ||||  ||
GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattccaggctgccagtacttttgtatagtatatttaagtagagatgtatatgattggtgccaatattg-ttgtgatattctttag

upper sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctactaa----ataacatgttgatgtaaaaatgtcaa-attactaagattattgt-ggtattgattatgattt-ctccag
|||  | ||||| |||||||| |||||||| ||    |||||||| || ||||| |||||||||||||||||||||||||||   |  ||        |||| |    | | | |   | | |  | | ||  || |   ||  ||||||  | ||| || |  |||
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagttattagtttattattagtgctgtgaatgacgttagtattg-ctgtgacttgcatcag

upper sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatccta-ctaaataacatgttgatgtaaaaatgtca-aattactaagattattgtggtattgattatgatttctccag----
|||  ||||||| ||||||||| ||||||| ||    |||||||| || ||||| ||||||||||||||||||||||| |||      || ||   | | |    || || |  || | | || || |    | | ||  ||    |||    |  || ||     
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttaggctataactttctgataaagcgaagttattattttataagtagtgctgtgaatgatgttcatattgctgtgacttcaatcag