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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCCGCGGAGATTAGAGAGCTAATAGTCCGATGTGTTTCTCAAATGGTTCTTAGTCGAGTTAGTAATGTGAAATCTGGTTGGAAAAATGTCTTCACAgtaagtaacacacaacatttctcaatacaatatccatctttgaatatgtttactaatgatcttgtttgtttag

Basic information

species Arabidopsis thaliana
transcript AT4G35380.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35380.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 8
CAGTTCCGCGGAGATTAGAGAGCTAATAGTCCGATGTGTTTCTCAAATGGTTCTTAGTCGAGTTAGTAATGTGAAATCTGGTTGGAAAAATGTCTTCACAgtaagtaacacacaacatttctcaatacaatatccatctttga-atatgtttactaatgatcttgtttgtttag---------------------------
||   || | || ||||||||  ||||||| || ||| |||| || ||||| ||||| || || ||||||||||||||||| ||||||| ||| || |  |||| |     |      ||   | |    |  ||  |    | | ||| || |  |  || |  |      |                            
CAACACCACAGAAATTAGAGAATTAATAGTTCGTTGTATTTCACAGATGGTCCTTAGCCGTGTCAGTAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtaa-tgttgaagttggcttgatattctcctccccccccccaagacatggtttcagaccatttgataaaaaaaattgaaattgccaaatgttgctcaattg

upper sequence: AT4G35380.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G00230.1 (Glycine max), 5'ss of exon 9
CAGTTCCGCGGAGATTAGAGAGCTAATAGTCCGATGTGTTTCTCAAATGGTTCTTAGTCGAGTTAGTAATGTGAAATCTGGTTGGAAAAATGTCTTCACAgtaa----gtaacacacaacatttctcaatacaatatccatctttgaatatgtttactaatgatctt-gtttgtttag-----------------------
||   || | || ||||||||  ||||||| || ||| |||| || ||||| ||||| || || ||||||||||||||||| ||||||| ||| || |  ||||    | |     |   |||   | || |    |    | |    | |   ||   ||| | |  |    |||                         
CAACACCACAGAAATTAGAGAATTAATAGTTCGTTGTATTTCACAGATGGTCCTTAGCCGTGTCAGTAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtaatgttgaagtttgcttgattctcccatccccc-tgttccctcctctctccctagacatggtttcagaccatttgataaacaacaaaaactgaaactgt

upper sequence: AT4G35380.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S264_74V6.1 (Physcomitrella patens), 5'ss of exon 9
CAGTTCCGCGGAGATTAGAGAGCTAATAGTCCGATGTGTTTCTCAAATGGTTCTTAGTCGAGTTAGTAATGTGAAATCTGGTTGGAAAAATGTCTTCACAgtaagtaacacac------aacatttctcaatacaatatccatctttgaatatgtttactaatgatcttgtttgtttag------------------------
||| || |  || ||| ||||||| ||| ||||||||||||||||||||||  ||   || ||  | ||||| |||||||| |||||||   | ||||  ||| | |    ||       || |||||  || || | |  ||  |  | | | | | |   || |  | ||||    |                        
CAGCTCTGTTGAAATTCGAGAGCTGATAATCCGATGTGTTTCTCAAATGGTCTTTGCACGTGTGGGGAATGTCAAATCTGGCTGGAAAATCATGTTCATGgtatgaattctaccattcggacttttcttcat-cattttgtatactcaactgtatgttcc--tggtactttttgggaggatgtgactgataattgtcgtcctg

upper sequence: AT4G35380.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 9
CAGTTCCGCGGAGATTAGAGAGCTAATAGTCCGATGTGTTTCTCAAATGGTTCTTAGTCGAGTTAGTAATGTGAAATCTGGTTGGAAAAATGTCTTCACAgtaagtaacacac------aacatttctcaatacaat-atccatctttgaatatgtttactaatgatcttgtttgtttag----------------------------------------------------------------------------------------------------------------------
| | || |  || ||| ||||||| ||| ||||||||||||||||||||||| ||   || ||| | ||||| |||||||| ||||| |   | || |  ||| | |    ||       || ||  | | |    | || ||  | || |    | |      | ||  | | || |                                                                                                                        
CTGCTCTGTTGAAATTCGAGAGCTGATAATCCGATGTGTTTCTCAAATGGTTTTTGCGCGTGTTGGGAATGTCAAATCTGGCTGGAAGATCATGTTTATGgtacggactctactcctttgactttatttattgtgttcattcagttctgtacgcatgtgaagcagttcaggctcgtgtgcacttggtatacagttttgtagaatatggttgatagttggttaccttgaacgatttcgttttgtcctgattaatgcatccttctcttatgattgataattagagttggcacatatgtag