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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTCGCCATTAGGTGAGGCCTGCTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTCATGACACATTACAGAGACGACGAGGGCACAAACGAGgtaatcaaatggtagttttggtttcaattgctaaaatgctttaaaaagagtcttgactaacttttggggtttatctatggatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G35230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 7
ACTTTCGCCATTAGGTGAGGCCTGCTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTCATGACACATTACAGAGACGACGAGGGCACAAACGAGgtaatcaaatggt------agttttggtttcaattgctaaaatgctttaaaaagagtcttgactaacttttggggtttatctatggatttcag
 || || ||| | ||||||||||| ||| || |||| |||||||| || |||||||| ||||| |||||||| |||||||| || || || || || ||||||||  | | ||      || |||  |||      ||  |     ||| |   | |  ||| |   || |   | |  | ||| | || |||
TCTATCACCAATGGGTGAGGCCTGTTCACGACTGGACCTCACAGCAATCCATCAGATCTTGGTTATGACACACTACAGAGATGATGAAGGAACCAATGAGgtaattgagttgttgatgaaggtttttttttggcatctctatactcttacatccaatggtgagtggtttatcttggtgttgtattggtt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124775040|gb|EH865169.1|EH865169
EST:     TTTTGGTCATGACACATTACAGAGACGACGAGGGCACAAACGAG                         TTATCATTCCAAGAATGGACTCAACAAATGAAAGATATGCTTGATGCACGG
genomic: TTTTGGTCATGACACATTACAGAGACGACGAGGGCACAAACGAGgtaatcaaat ... tggatttcagTTATCATTCCAAGAATGGACTCAACAAATGAAAGATATGCTTGATGCACGG