1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGATACGATTACAAGCAATGTATTGGGTTGAAAGTAAAGCCTCGGAAAGGAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAGgtaaacaaagtttgaacacatttcatttcttctcttgactcctattccttggattagttcatgctaataggagctctttgctgtggttccaatgcttctgcag
species | Arabidopsis thaliana |
transcript | AT4G33910.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTAATCAG ACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCAEST: gi|86074577|gb|DR370334.1|DR370334
genomic: GAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAGgtaaacaaag ... gcttctgcagACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCA
EST: GAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAG ACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCAEST: gi|86081200|gb|DR376957.1|DR376957
genomic: GAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAGgtaaacaaag ... gcttctgcagACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCA
EST: GAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAG ACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCA
genomic: GAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAGgtaaacaaag ... gcttctgcagACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGATACGATTACAAGCAATGTATTGGGTTGAAAGTAAAGCCTCGGAAAGGAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAGgtaaacaaagtttgaacacatttcatttcttctcttgactcctattccttggattagttcatgctaataggagctctttgctgtggttccaatgcttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG