Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCAAATTTTTGGAGCTGAGCTTTTCTAACCATGCAGCGGCTAGTCGTGTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGGgtataaatagatgcttcctaatataaatattttctgcggattgtttcacttgttattacacattactgattttccctcgtccaatatgtctgattctcaa...

Basic information

species Arabidopsis thaliana
transcript AT4G33240.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 6
TTGGCAAATTTTTGGAGCTGAGCTTTTCTAACCATGCAGCGGCTAGTCGTGTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGGgtataa-atagatgcttcctaatataaatat-tttctgcggattgt--ttcacttgttattacacattactgattttccctcgtccaatatgtctgattctcaa
|||| ||||||||||| || || ||||| |||||||| || || ||| | || |||| |||||||||||| |||||||| || || || || || |||||||| |  ||     |||    || |    || ||  |  || ||||   | || |||  || ||  | |                                   
TTGGAAAATTTTTGGAACTTAGTTTTTCAAACCATGCGGCAGCAAGTAGGGTTGCCAGCTGTGGTCATTCACTTCACAGGGATTGCCTTCGCTTTTACGGgtacattattatctcttatccatcttgtcatattgttaagggttgtaccttacatgtgttttcatttcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069888|gb|DR365645.1|DR365645
EST:     GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGG                         TTTTGGGAGAATGGTTGCT
genomic: GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGGgtataaatag ... cttaatgcagTTTTGGGAGAATGGTTGCT
EST: gi|86069890|gb|DR365647.1|DR365647
EST:     GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGG                         TTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGC
genomic: GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGGgtataaatag ... cttaatgcagTTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGC