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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgattatctctttcatgtctcatataagttatatttcttggggtacgagacgatttttttttttat...

Basic information

species Arabidopsis thaliana
transcript AT4G32760.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgat-tatctctttcatgtctcatataagttatatttcttggggtacg-agacgatttttttttttat
| ||| |  || ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| || |||||||| || |||||||  | ||  ||| |  | | |  || ||     | ||| |            | |||| |  ||   | | |  || | | | ||             
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagt-cactgcattatgttatactttttcaacgagtatatatacgaacaaatgaaaataattgttaaaacctagtatatggatatgagcgaaagggcct-

upper sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgat---------------tatctctttcat-gtctcatataagttatatttcttggggtacgagacgatttttttttttat--------------------------------------------
|   | | ||| |||||||| || ||| |||||||||||||||| || ||||| || |||||||| ||||| |||||||| |||||||||| ||     ||     ||   | |   || | ||               ||| |   |||| || || | |   || ||||| | |    | |  |  |||||| |    |                                             
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaag-gcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgt-attatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag

upper sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G21360.1 (Glycine max), 5'ss of exon 1
GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgattatctcttt----catgtctc-----atataagttatatttcttggggtac-gagacgattt-ttttttttat-----------------------------------------------
|   | | ||| |||||||| || ||| |||||||||||||||| || ||||| || |||||||| ||||| |||||||| |||| ||||| ||     ||     ||   | |   || | || ||  ||       || | |         |   | || ||  |||   |    | |  || | || |||||||                                               
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTTgtaag-gcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctag

upper sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 5'ss of exon 7
GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgattatctctttcatgtctcatataagttatatttcttggggtacgagacgatttttttttttat---
|  ||||  || ||||||||  | ||  |||| || |||||||| |||||||| ||||||||||| ||||| |||||||| ||| ||| ||  ||| |  || |  ||||         ||  ||| || | | ||   |     |  | |  || | |    | |   | | || |  |   ||    
GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGCgtgaggcctcatacttcttttcttgttacatgctttgttaactttgtaatcattgtaccatatcactttgcattattttc---atgcttctgctacctagaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828022|gb|CK117706.1|CK117706
EST:     CAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTC                         GGACGAGTCTTTGTTATGTCAAGGTCTGGCTTTGAATGATGAC
genomic: CAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctc ... tgtttttcagGGACGAGTCTTTGTTATGTCAAGGTCTGGCTTTGAATGATGAC
EST: gi|125145087|gb|EL180312.1|EL180312
EST:     CAACTCGACTTC                         GGACGAGTCTTTGTTATGTCAAGGTCTGGCTTTGAATGATGACTTGCAGCG
genomic: CAACTCGACTTCgtaagagctc ... tgtttttcagGGACGAGTCTTTGTTATGTCAAGGTCTGGCTTTGAATGATGACTTGCAGCG