1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTCAAGTAACAAAGACATGCCAAGCTTTCCCATTGTACGCCATACCAGCGAACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAGgtaatctacagttatatctattgcattttgttttatgcattttgtctagagttaatatgtgaacaagttgcattttgcag
species | Arabidopsis thaliana |
transcript | AT4G32630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAG ATGACTGCATCATCTGAGAAAATGGAAATTCCTAGAAGTTTAATTGATGATEST: gi|116405913|gb|EG448505.1|EG448505
genomic: AACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAGgtaatctaca ... cattttgcagATGACTGCATCATCTGAGAAAATGGAAATTCCTAGAAGTTTAATTGATGAT
EST: AACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAG ATGACTGCATCATCTGAGAAAATGGAAATTCCTAGAAGTTTAATTGATGATEST: gi|116405920|gb|EG448512.1|EG448512
genomic: AACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAGgtaatctaca ... cattttgcagATGACTGCATCATCTGAGAAAATGGAAATTCCTAGAAGTTTAATTGATGAT
EST: AACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAG ATGACTGCATCATCTGAGAAAATGGAAATTCCTAGAAGTTTAATTGATGAT
genomic: AACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAGgtaatctaca ... cattttgcagATGACTGCATCATCTGAGAAAATGGAAATTCCTAGAAGTTTAATTGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAGTAACAAAGACATGCCAAGCTTTCCCATTGTACGCCATACCAGCGAACTCAATATTGTAAAAGTTGAGAAAAAGAAGGATCCAGTGAATAATCAGgtaatctacagttatatctattgcattttgttttatgcattttgtctagagttaatatgtgaacaagttgcattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG