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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGgtaatataaactaaacagataactaaattgaccctaaacactcaagacttgctttgaatttgtgagattttcaatgatag

Basic information

species Arabidopsis thaliana
transcript AT4G32272.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32272.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 6
GTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGgta--atataaactaaacagataact-----aaattgaccctaaacactcaagactt-gctttgaatttgtgagattttcaatgatag-------------------
| ||||| |||||| | |||||||||||||| ||||||| ||||||||  || |  | |   |   |  ||     ||    |   | |   |||   ||||    |  || || | |  | || ||   |                     
GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATGgtatcattttgattgcccttttttcttcttgaacactattttgattgctcttaacttcagatcaaacttcttatgtcttaaaatcttatatcctgtttggatttcag

upper sequence: AT4G32272.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 6
GTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGgtaatata--aactaaacagataactaaattgaccctaaacact-caagacttgctttgaatttgtgagattttca-atgatag--------------------
| ||||| |||||| | |||||||||||||| ||||||| |||||||| |||    | |   |   |  ||      || ||      |      |||  ||| || || | | || || | ||  ||                     
GAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATGgtattattctgattgcccttttttcttctcgaacactgttttttattgctcttaatttcaacttcttatatcttaagatcttatacccctcttctggattacag

upper sequence: AT4G32272.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G07120.1 (Glycine max), 5'ss of exon 4
GTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGgtaat---ataaacta-aacagataactaaattgaccctaaacactcaagacttgctttgaatttgtgagattttcaatgatag----------------------------------
| ||| | |||||| | |||||||||||||||||||||| |||||||||    ||| | |  | || ||  |  |    ||  |      |    |            ||||    |||| |||   |                                   
GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGCAATGgtaagctgatagattgtatcaaatggcctatcaaactttttttttttgtaaaagaaagcatgcttgttttctttttaatctaaatgtggtatgaaataatttttttattgtgttatag

upper sequence: AT4G32272.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 6
GTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGgtaat---ataaacta-aacagataac---taaattgaccct----------------aaacactcaagacttgctttg-aatttg--tgagattttcaatgatag----------------
| ||| | |||||| | ||||||||||||||||||||||  ||||||||    ||| | |  | || ||  |   | | |||    |                || ||  |  |  || ||||  ||| |   || |||||  ||  ||                  
GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgatagattgtatcaaatggcctatcagttgtttttttttcttggtaaaagaaagcatgcttgtttttctttttaatctaattgtgatttgaaagaatttttctattatgttatag