1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTCAGGGTCTTTCGGGAACAGGTTCACTGCGATTAGCAGCGGCTCTTATAGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGGgtacattgtcttgaccacaaacatttttgagtgatttggtttcatatttaaccgcctttatcaactgtacaaaataccacatcag
species | Arabidopsis thaliana |
transcript | AT4G31990.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGG GTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACCEST: gi|125091382|gb|EL149205.1|EL149205
genomic: AGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGGgtacattgtc ... accacatcagGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACC
EST: GCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGG GTAATCACAAGAATATACTTCAATGATGCCAAAGTTCCGTGGTCCGAAEST: gi|124928291|gb|EL005949.1|EL005949
genomic: GCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGGgtacattgtc ... accacatcagGTAATCACAAGAATAT-CTTCAATGATGCCAAAGTTCCGTGGTCCGAA
EST: AGAGCTTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGG GTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACCEST: gi|164029105|gb|ES152243.1|ES152243
genomic: AGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGGgtacattgtc ... accacatcagGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACC
EST: GTTGTTGATCTCATCACCAACCTGGG GTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAAATAC
genomic: GTTG-TGATCTCATCACCAACCTGGGgtacattgtc ... accacatcagGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAA-TAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCAGGGTCTTTCGGGAACAGGTTCACTGCGATTAGCAGCGGCTCTTATAGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGGgtacattgtcttgaccacaaacatttttgagtgatttggtttcatatttaaccgcctttatcaactgtacaaaataccacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA