Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT4G30020.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 5'ss of exon 6
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattc-tgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||||| ||||| ||||||| | ||||||| |||||||||||||||||| ||   || |||||||| ||| | ||| | ||| | ||  |||| ||||||||     |       ||  |  ||| |     || |   | ||  | ||||     |   |  ||   |  |||| || |   |   | | ||      ||||                    
CCATGGATAACCACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAAAATCATTTGGTGCTAGGAAATGGGAAACTTCTTCCTGGACTTGGTGTATCACgtaagttctgttt-------attcatgtattttagctcaaattttggttttctattactacatgtatggtatatgcattcatgggcaacaaaaattgtacaa-aatga--------------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G114394_T02 (Zea mays), 5'ss of exon 7
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||||||||||| ||||||| | ||||||| ||||||||||| |||||| | || || |||||||| ||| | ||  | ||  | ||| |||| ||||||| |     || ||| |     | ||||  | | | |  ||  | | ||||||   |  |   |||      ||| ||| | | |  ||||     |||   ||  |                
CCATGGATAACTACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAGAATCATTTAACACTAGGAAATGGAAAACTTCTCTCTGGGCTTGGAGTATCACgtaagtat-----ttttctaagt---acatgtcaa-caaaatcatgatgaattatttgtcagtactgtgtgcagc-attttgaat-tgtggattgtagaattgtgcaaaaa----------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G099452_T02 (Zea mays), 5'ss of exon 7
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgt-tagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||||| ||||| ||||||| | ||||||| ||||||||||| |||||| | || || |||||||| ||| |  || | ||| | ||| ||||||||||||    | |||||   |  || | ||| | |   | |  ||| | |  |||||   |  |   |||  ||  ||||  || | | | |||||  |  ||| || |  ||               
CCATGGATAACCACTGTTGCTGCTGGAGTTGATGACCGCAGATACAAGAATCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtc---cttttct---acatacacatgaaca---aaatcataatgaactatttgtcagtactgtgtgcagcatatt--gaat-tgtgtattgtataattg-tgcaaaat---------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G00580.1 (Glycine max), 5'ss of exon 6
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||| |  |||| || ||||||||||||||||| ||||| ||||||||| |||  ||||||||||| ||||   | || ||||| || ||||| ||| ||||| |||    |||||      ||| |   | || | | || |  ||| |||||          ||      ||  |||      | | |  | |||    ||                   
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttt-tccaacttctgac-----tatatttcttcagata-tattgttttttttaatggattggcattgagac-ttgggagatataatgtggaatattttggaaa-------------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 6
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagact---gttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||| |  |||| || ||||||||||||||||| ||||| ||||||||| |||  ||||||||||| ||||   | || ||||| || ||||| ||| ||||| |||    | ||| ||| || | |      | | ||| |||||  |||   |  ||||||   |  |  | ||   || | | |    ||   ||                           
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttt-tccaacttttga-ctatattt-tcttcagatataattgtaatggattgccgttgagacttgggagatataatgtggaatattttggatgaaatt---------------------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 6
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| |||||||  || |||||||| |||||  | |||||| | ||||| || ||| |||||  |   |  |   | |   |||   |||  |     |  | | | ||  |    || |  |  |    || |||| |   | |  |||   | |                         
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttccaactatgtttattaggat--atgttgttcttaatcatgcactgggacatggagataaaatgctga-tgattatggtggaaatcta------------------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 7
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| ||| |||  ||||||||||| |||||  | |||||| | ||||| || ||| |||||  |   |  ||  | ||  | |   |||          |||||||  ||||  |  ||||| || |      | |    ||    || || |  | || |    ||             
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttcctactatatttcttaggat----------gtaattttgttaatcatggactggtactaggagataaaatgct--gatgattat--ggtggaaatcta-------------

upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 7
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
|| |||||  |  |||| ||||| ||||| |||||||| ||||||||||| ||||| ||| | |||||||| |||||  |  | ||||| || || || |||||||| ||   |   ||||  ||  | || |  || ||    |||   ||    |  | | | | | |   || | ||||   ||   || |||  ||       |                   
CCGTGGATTGCATCTGTAGCTGCAGCAATCGATGATCGTAGATACAAAAACCATCTTACTTTGGGAAATGGGAAAATCTTACCTGGAATTGGTTTGTCACgtaagtt-ctatataacctgaattatgt-tggaattctactgtttag--gttggccttgggaaacaatat-gattcaatctg---ctgaatactggagttcaatcaca-------------------