1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccattttttcttggtcactatacttttaatatataattagagtcactatactttttattggatcaattgaatccaaatctaaaaaatgtggaca...
species | Arabidopsis thaliana |
transcript | AT4G29100.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTTCGTCGTCATCTAEST: gi|47831794|gb|CK121478.1|CK121478
genomic: CAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTT-CGTCGTCATCTA
EST: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACGEST: gi|86059910|gb|DR355667.1|DR355667
genomic: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
EST: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACGEST: gi|47832050|gb|CK121734.1|CK121734
genomic: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
EST: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
genomic: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccattttttcttggtcactatacttttaatatataattagagtcactatactttttattggatcaattgaatccaaatctaaaaaatgtggaca
- - AAGGAG
- - AGGAGA
- - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat