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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAGGGCCAGTCAGAAATTTACGCAGAGCAGGAGAGACTGGTGTTAACCAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGgtaaaaattccgtgtttcacacacatttcatcaaaagtctttcgtctctaaagttagttaagttcgttggattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G29000.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429125|gb|EG471717.1|EG471717
EST:     CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAG                         AATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG
genomic: CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGgtaaaaattc ... tggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG
EST: gi|116399763|gb|EG442355.1|EG442355
EST:     CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAG                         AATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG
genomic: CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGgtaaaaattc ... tggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG