Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTGCAAAATGCTTCAACAGGATGGAGCAGTGTAAAGAGCTACCTGAAGGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCGCCCCTTCCAgtatgcctaatctaatgaactcaggaccttgcatcctcataaacttccaagatatagagatgaaagctcttcgcttgattacag

Basic information

species Arabidopsis thaliana
transcript AT4G28220.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164046411|gb|ES182117.1|ES182117
EST:     GGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCGCCCCTTCCA                         GTACAAGCACTTTGGACAATTTGCTCCACTAGGAGGGGACCAAG
genomic: GGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCGCCCCTTCCAgtatgcctaa ... ttgattacagGTACAAGCACTTTGGACAATTTGCTCCACTAGGAGGGGACCAAG
EST: gi|86077499|gb|DR373256.1|DR373256
EST:     GGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCGCCCCTTCCA                         GTACAAGCACTTTGGACAATTTGCTCCACTAGGAGGGGACCAAGCAGCAGC
genomic: GGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCGCCCCTTCCAgtatgcctaa ... ttgattacagGTACAAGCACTTTGGACAATTTGCTCCACTAGGAGGGGACCAAGCAGCAGC
EST: gi|19743033|gb|AU228386.1|AU228386
EST:     GGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCCCCCCTTCCA                         GTACAAGCACTTT-GACAATTTGCTCCACTAGGA-GGGACCAAGCAGCAGC
genomic: GGTCCTAAGCGCTTCAGAACTGGCGGGCATCATCAGTTTCGCCCCTTCCAgtatgcctaa ... ttgattacagGTACAAGCACTTTGGACAATTTGCTCCACTAGGAGGGGACCAAGCAGCAGC