1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatcatatgagatacatatttccacaaaagaaaacaactattacatgtgttacattatatcttagtagttctacctgaagtaactcaaggatttctgttgctttccgcacag
species | Arabidopsis thaliana |
transcript | AT4G27040.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACCCACAGAGCTGAACAAAGACCATAGCCAGATTTTGGAGTTGGCTCAG GGTCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404485|gb|EG447077.1|EG447077
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404471|gb|EG447063.1|EG447063
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404463|gb|EG447055.1|EG447055
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: GAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404479|gb|EG447071.1|EG447071
genomic: GAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404489|gb|EG447081.1|EG447081
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404476|gb|EG447068.1|EG447068
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404481|gb|EG447073.1|EG447073
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG G-CCAAAGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404466|gb|EG447058.1|EG447058
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAG-GGTACAAAGACGCCTCTCATGGACAEST: gi|116404478|gb|EG447070.1|EG447070
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: ACCCACAGAGCTGAACAAAGACCATAACCAGATTTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGGATTGTGGAAGAAGTACAAAGACGCCTCTCATGGACEST: gi|116404474|gb|EG447066.1|EG447066
genomic: ACCCACAGAGCTGAACAAAGACCATAACCAGATTTT-GGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTG-ATTGTGGAAGAGGTACAAAGACGCCTCTCATGGAC
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|164164851|gb|ES102592.1|ES102592
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGEST: gi|116404364|gb|EG446956.1|EG446956
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGG
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAAGTACAAAGACGCCTCTCATGGACAEST: gi|116404356|gb|EG446948.1|EG446948
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404487|gb|EG447079.1|EG447079
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404482|gb|EG447074.1|EG447074
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTGTGGAGTTGGCTCAG GGCCAACGCTTTGTGATTGTGGAAGAGEST: gi|116404362|gb|EG446954.1|EG446954
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAG
EST: ACCCACAGAGCTGAACAAAGAC-ATAACCAGATTTTTGGAGTTGGCTCAG GGCCAAGGCTTTEST: gi|116404459|gb|EG447051.1|EG447051
genomic: ACCCACAGAGCTGAACAAAGACCATAACCAGATTTT-GGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTT
EST: TACCCACAGAGCTGAACAAAGACCATAGCCAGATTTTGGAGTTGGCTCAG GGTCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404477|gb|EG447069.1|EG447069
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404467|gb|EG447059.1|EG447059
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACAEST: gi|116404455|gb|EG447047.1|EG447047
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
EST: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAG GGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
genomic: TACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatca ... ttccgcacagGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGgttataatcatatgagatacatatttccacaaaagaaaacaactattacatgtgttacattatatcttagtagttctacctgaagtaactcaaggatttctgttgctttccgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG