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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCAATTGCTTCAGGTTGCACAGAAATGCCAGAGCACGATCTCAGAGAGTGGGTCAGAGGGGGTTTCTCAGCAGGATTTACAGTCAAATAGTAACATgtaagttaatgcacattattcttttattgtcgatactctggcatttgtttctagtgctttttatcattgctgggtgccattttgtgtatcag

Basic information

species Arabidopsis thaliana
transcript AT4G25520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25520.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G32250.1 (Glycine max), 5'ss of exon 6
TGAACCAATTGCTTCAGGTTGCACAGAAATGCCAGAGCACGATCTCAGAGAGTGGGTCAGAGGGGGTTTCTCAGCAGGATTTACAGTCAAATAGTAACATgtaagttaatgcac-attattcttttattgtcgat--actctggcatttgtttctagt---gctttttatcattgctgggtgccattttgtgtatcag--
| ||||||||  ||||||| || || ||||||||||| || ||  | || |||||| | || |||||||||||||| || |||||  |||| || ||||||||||||||| ||   || |||||| ||  | | |  | |  |  | |  |   |||    | | ||| || || |||    || | |    |  | |  
TCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCTGATGGGGTTTCTCAGCAAGACTTACAAACAAACAGCAACATgtaagttaatacattgttgttctttaatgattggtgtatttagtaaatcctccttagctgagatatttctctttactgcacaccttatatgatgcctgct

upper sequence: AT4G25520.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G26960.1 (Glycine max), 5'ss of exon 8
TGAACCAATTGCTTCAGGTTGCACAGAAATGCCAGAGCACGATCTCAGAGAGTGGGTCAGAGGGGGTTTCTCAGCAGGATTTACAGTCAAATAGTAACATgtaagttaatgcac-attattcttttattgtcgatac-tctggcatttgtttctagtgctttttatcattgctgggtgc-cattttgtgtatcag-----
| ||||||||  ||||||| || || ||||| ||||| || ||  | || |||||| | ||  ||||||||||||| ||||| ||  |||| || ||||||||||||||||||   || ||| || ||  | | |   | | | |  |  | ||       | |||   | ||   ||| ||  ||   |          
TCAACCAATTAATTCAGGTAGCTCAAAAATGTCAGAGTACAATTGCTGAAAGTGGGGCGGATTGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATgtaagttaatgcattgttgttccttaatgattggtgtatttagtaaatcctccttagctgatatatttattcttactgcacaccttacatgatgctgtta

upper sequence: AT4G25520.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv16s0100g00500.t01 (Vitis vinifera), 5'ss of exon 6
TGAACCAATTGCTTCAGGTTGCACAGAAATGCCAGAGCACGATCTCAGAGAGTGGGTCAGAGGGGGTTTCTCAGCAGGATTTACAGTCAAATAGTAACATgtaagttaatgcacattattcttttattgtcgatactctggcatttgtttctagtgctttttatcattgctgggtgccattttgtgtatcag----------
|||| || ||| | |||||||||||||||||||| ||||| ||  | || ||||| || || ||| ||||||||||||| |||||  ||||||| ||||||| ||||||     |  | | | | |    |  | || |||||  |   | |  || || | | | |  |         | |  |||  | |          
TGAATCAGTTGGTGCAGGTTGCACAGAAATGCCAAAGCACAATTGCTGAAAGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATgtgagttaa-atggagcaatgtctgaactccttttctttggcaaatagatgttctg-ttatcagcctaaccttcccttctctcctgtgcctgcgcacagtgt