Sequence
atgc intronic sequence ATGC exonic sequenceGCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTTAGgtgagtagctcttgttataaaaactcattaaaatttttagatatcacaaacttatggagaaacattgccttgtgtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G24740.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 7
GCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTTAGgtgagta--------gctcttgttataaaaa----------ctcattaaaat---ttttagatatcacaaacttatgg--agaaacattgccttgtgtgcag-----------------------------
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GCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAACTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGgtatatacacatactgtacatgctgtggaaagaatgcctgcctgccttaactgtgttttgcatgttgacacttgacaatcatgagacttgctatatgtgtgctaaagttgattttggcaatggtgttttag
upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 7
GCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTTAGgtgagtagctcttgttataaaaactcattaaaatttttagatatcacaaacttatgga----gaaacattgcc-ttgtgtgcag-------------------------------------------
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GCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGgtatata-tacatactgtaaatgctgtggaaagaatgcctgtctaactgtgttttgcatgttgacacatgacaatcatgagaagggctatatgcaagctaaagttgattttggcaatgatgttttag
upper sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
GCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTTAGgtg--------agtagct-----------cttgttataaaaactcattaaaatttttagatatca---caaacttatgga--gaaacattgccttgtgtgcag-----------------------------------------------------------------
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GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86086900|gb|DR382659.1|DR382659EST: TATAGGGCACCAGAAGTCATTTTAG GTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAG
genomic: TATAGGGCACCAGAAGTCATTTTAGgtgagtagct ... ttgtgtgcagGTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTTAGgtgagtagctcttgttataaaaactcattaaaatttttagatatcacaaacttatggagaaacattgccttgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT