1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTATGCATGACTTGCGCATGATTCATACGGACCTTAAACCAGAAAATATTCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAGgtatatctcgaatgcaactgtgtgtgaccttaatgtggccaactatttaagtgctgaaggaatttggttgtgtttcctgatgcag
species | Arabidopsis thaliana |
transcript | AT4G24740.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAATATTCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAG GGGTCCCGATTACAAAGGGATGTATGCTATAAAAGAGTGCCTAAAEST: gi|124753928|gb|EH844058.1|EH844058
genomic: AAAATATTCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAGgtatatctcg ... cctgatgcagGGGTCCCGATTACAAAGGGATGTATGCTATAAAAGAGTGCCTAAA
EST: TCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAG GGGTCCCGATTACAAAGGGATGTATGCTATAAAAGAGTGCCTAAATCAAGT
genomic: TCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAGgtatatctcg ... cctgatgcagGGGTCCCGATTACAAAGGGATGTATGCTATAAAAGAGTGCCTAAATCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGCATGACTTGCGCATGATTCATACGGACCTTAAACCAGAAAATATTCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAGgtatatctcgaatgcaactgtgtgtgaccttaatgtggccaactatttaagtgctgaaggaatttggttgtgtttcctgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA