Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGTGAACTTCCTCTTGGTCCGCAACGAAAGCAACAAAGTTGTGCGTCTCTGCAATTCAGTTTCTTTGGACCTAAGCTATACGTGAATACCACTCCGgtatgggtttgtttcatccctgaatatgtagcttgctgatgcaggtttatttggtcagtcaagtctgatctcattaaccctgtgtggttagattttgtttaaagtcctccagtcctgagatgctcgttctcgtttgtctggtttcag

Basic information

species Arabidopsis thaliana
transcript AT4G24290.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24290.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G28780.1 (Glycine max), 5'ss of exon 7
TTTTAGTGAACTTCCTCTTGGTCCGCAACGAAAGCAACAAAGTTGTGCGTCTCTGCAATTCAGTTTCTTTGGACCTAAGCTATACGTGAATACCACTCCGgtatgggtttgtt-tcatccctgaatatgtagcttgctgatgcaggtttatttggtcagtcaagtctgatctcattaaccctgtgtggttagattttgtttaaagtcctccagtcctgagatgctcgttctcgtttgtctggtttcag
 || ||||| |||||||||||||| |||||||||||||  |||| ||| ||| | || || || ||| | || || ||||| || || ||  |||| | |||    ||||||| |    |||| |||| ||| |      ||   ||   | |  |  ||||   || ||| |||| |     |||  ||   | |  ||||                                              
ATTCAGTGACCTTCCTCTTGGTCCCCAACGAAAGCAACGGAGTTCTGCATCTTTACAGTTTAGCTTCATGGGCCCAAAGCTTTATGTTAACTCCACACAGgtgaaagtttgttcttggtcctggatatctaggtattcattggttgtgcctcta-tgggtcataactaatcacattca-----tgtctttgtttgtcatttagtag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067785|gb|DR363542.1|DR363542
EST:     CTCTGCAATTCAGTTTCTTTGGACCTAAGCTATACGTGAATACCACTCCG                         GTTGATGTTGGTAAGAGGCCAATCACTGGCATGCGGCTCTACCTAGAGGGT
genomic: CTCTGCAATTCAGTTTCTTTGGACCTAAGCTATACGTGAATACCACTCCGgtatgggttt ... ctggtttcagGTTGATGTTGGTAAGAGGCCAATCACTGGCATGCGGCTCTACCTAGAGGGT
EST: gi|86067783|gb|DR363540.1|DR363540
EST:     CTCTGCAATTCAGTTTCTTTGGACCTAAGCTATACGTGAATACCACTCCG                         GTTGATGTTGGTAAGAGGCCAATCACTGGCATGCGGCTCTACCTAGAGGGT
genomic: CTCTGCAATTCAGTTTCTTTGGACCTAAGCTATACGTGAATACCACTCCGgtatgggttt ... ctggtttcagGTTGATGTTGGTAAGAGGCCAATCACTGGCATGCGGCTCTACCTAGAGGGT