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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAgtgagtgattttttcttgtgttaggcctgttaggccgttaacatagtgtgcttatgatcaattgtacgtgattataattacag

Basic information

species Arabidopsis thaliana
transcript AT4G23850.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125252928|gb|EL267013.1|EL267013
EST:     TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA                         CTGTTGTGAGCTTCGGGGGTGTCTCACGT
genomic: TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAgtgagtgatt ... ataattacagCTGTTGTGAGCTTCGGGGGTGTCTCACGT
EST: gi|125018978|gb|EL091247.1|EL091247
EST:     TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA                         CTGTTGTGAGCTTCGGG
genomic: TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAgtgagtgatt ... ataattacagCTGTTGTGAGCTTCGGG
EST: gi|125281992|gb|EL296077.1|EL296077
EST:     TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA                         CTGTTGTGAGCTTC
genomic: TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAgtgagtgatt ... ataattacagCTGTTGTGAGCTTC
EST: gi|125045108|gb|EL117377.1|EL117377
EST:     ATCTCTGAGTTGTTCAAGACATAGCCCAAACTCGACAGAGTACATGAAAA                         CTGTCGTGAGCTTCGGGGGTGTCTCACGTGAACAAAAAGAAGAAGCTGAAA
genomic: ATCTCTGAGTTGTTCAAGACAT-GCCCAAACTCGACAGAGTACATGAAAAgtgagtgatt ... ataattacagCTGTTGTGAGCTTCGGGGGTGTCTCACGTGAACAAAAAGAAGAAGCTGAAA
EST: gi|125304597|gb|EL318682.1|EL318682
EST:     TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA                         CTGTTGTGAGCTTCG
genomic: TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAgtgagtgatt ... ataattacagCTGTTGTGAGCTTCG
EST: gi|125210271|gb|EL225225.1|EL225225
EST:     TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA                         CTGTTGTGAGCTTCGGGGGTGTCTCACGT
genomic: TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAgtgagtgatt ... ataattacagCTGTTGTGAGCTTCGGGGGTGTCTCACGT