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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGCGCATGTATGCAGgtacgagcagtgatgatatcatatcaacccattccaatctctccttacttaaatcctacacttacggtaatatctataatacttttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G23470.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125015062|gb|EL087331.1|EL087331
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAA
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAA
EST: gi|124717629|gb|EH809031.1|EH809031
EST:     TGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAG
genomic: TGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAG
EST: gi|116434599|gb|EG477191.1|EG477191
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGG
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGG
EST: gi|301501098|gb|HO206638.1|HO206638
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAAGATGGAAATG
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAA-GATGGAAATG
EST: gi|124720550|gb|EH811952.1|EH811952
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAA
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAA
EST: gi|125134662|gb|EL175419.1|EL175419
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGCTCGGGCCACAG
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAG
EST: gi|124993508|gb|EL065777.1|EL065777
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAG
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAG
EST: gi|125206972|gb|EL221926.1|EL221926
EST:     CGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAG
genomic: CGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAG
EST: gi|124929398|gb|EL006946.1|EL006946
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGACCACA
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGG-CCACA
EST: gi|116434598|gb|EG477190.1|EG477190
EST:     CTGCACGGTTTGCGCATGTATGCAG                         ACACAACACAAGATGGAAATGGACAAGAGG
genomic: CTGCACGGTTTGCGCATGTATGCAGgtacgagcag ... acttttgtagACACAACACAAGATGGAAATGGACAAGAGG