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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAGTTTCATATTCACTTGGTTCGCTGCTGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaaccattaccattactcaagattgcaaaagaaaaacatcaaagagcctttttatgaatgtttcttgtttcacag

Basic information

species Arabidopsis thaliana
transcript AT4G22890.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125251750|gb|EL265835.1|EL265835
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|125103002|gb|EL157558.1|EL157558
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTT
EST: gi|124993076|gb|EL065345.1|EL065345
EST:     GGCTTTATCTAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTAGGAACGGAAAACACCTCCTTCTTTGGAACAAT
genomic: GGCTTTATC-AATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGT-GGAACGGAAAACACCTCCTTCTTTGGAACAAT
EST: gi|116431831|gb|EG474423.1|EG474423
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|124845093|gb|EH929530.1|EH929530
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|124795262|gb|EH884941.1|EH884941
EST:     AATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: AATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|124896917|gb|EH973131.1|EH973131
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGG
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGG
EST: gi|124774374|gb|EH864503.1|EH864503
EST:     TTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|125195707|gb|EL210661.1|EL210661
EST:     TGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACC
genomic: TGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACC
EST: gi|125091557|gb|EL149380.1|EL149380
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAAT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAAT
EST: gi|124938659|gb|EL015267.1|EL015267
EST:     TTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|116431832|gb|EG474424.1|EG474424
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|86077608|gb|DR373365.1|DR373365
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
EST: gi|125283763|gb|EL297848.1|EL297848
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACA
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACA
EST: gi|86076317|gb|DR372074.1|DR372074
EST:     TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAG                         GGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT
genomic: TGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaacca ... tgtttcacagGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACAGTTTCATATTCACTTGGTTCGCTGCTGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGgtaagaaccattaccattactcaagattgcaaaagaaaaacatcaaagagcctttttatgaatgtttcttgtttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG