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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCGTAATGTTGACGAGAAGGACTGGCCACTTGTTGCTCAACGCGTTCATGACCACCTGAAACGATACCCTCGTTTGCGTATAACTCACGGTAGAAAGgtacttgtggaataaacatcactctggtttctcatattagatccaaataccttaacatagttttgttgatatgatcag

Basic information

species Arabidopsis thaliana
transcript AT4G22590.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116472681|gb|EG515273.1|EG515273
EST:     ATGACCGCCTGAAACGATACCCTCGTT-GCGTATAACTCACGGTAGAAAG                         GTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG
genomic: ATGACCACCTGAAACGATACCCTCGTTTGCGTATAACTCACGGTAGAAAGgtacttgtgg ... atatgatcagGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG
EST: gi|116472680|gb|EG515272.1|EG515272
EST:     ATGACCGCCTGAAACGATACCCTCGTT-GCGTATAACTCACGGTAGAAAG                         GTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG
genomic: ATGACCACCTGAAACGATACCCTCGTTTGCGTATAACTCACGGTAGAAAGgtacttgtgg ... atatgatcagGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG
EST: gi|116472690|gb|EG515282.1|EG515282
EST:     ATGACCACCTGAAACGATACCCTCGTTTGCGTATAACTCACGGTAGAAAG                         GTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG
genomic: ATGACCACCTGAAACGATACCCTCGTTTGCGTATAACTCACGGTAGAAAGgtacttgtgg ... atatgatcagGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG