Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCAAATATAATGGGTCGTTTCCTGTGGCTGACATGTCCCAGAGAGgtacttgaaagtttaagtcatgtcctgccttttttcatacaagaacctttacaattatttactaaccattatgttattggggttatgaatacag

Basic information

species Arabidopsis thaliana
transcript AT4G22340.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22340.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 5'ss of exon 7
CTTGCAAATATAATGGGTCGTTTCCTGTGGCTGACATGTCCCAGAGAGgtacttgaaagtttaagtcatgtcctgccttttttcatacaagaaccttta-caattatttactaaccattatgttattggggttatgaatacag
||||||||||| ||||||||||| | |||||| |||||||| ||  |||||    |   ||| ||     |  | |   |  |   | ||| |  |||  | ||  |    ||  | | || ||  ||     ||  || |||
CTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAGgta----agtatttcagatgaatattac---tccttgaagaagcatatttgtccatcttcagatatgcttaatttttgtgatacaattcatgcag