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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTACACACATTATGATCAGgtaatcaagatttcggtttgattatctctaaaccaaacggtctagcctttaggaaaaataggaattactctgttttttttttttttttgctgttgtattggttaggtttagagataatgaattgatgatcaatggatttttcggcag

Basic information

species Arabidopsis thaliana
transcript AT4G19645.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19645.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv10s0042g01360.t01 (Vitis vinifera), 5'ss of exon 5
ACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTACACACATTATGATCAGgtaatcaagatttcggtttgattatctctaaaccaaacggtctagcctttaggaaaaataggaattactctgttttttttttttttttgctgttgtattggttaggtttagagataatgaattgatgatcaatggatttttcggcag
   |||||| ||||||||||| | |||||||||||||| || |||   || ||||||||||||||    | |  |     ||| || ||    ||  |  | ||| ||       | ||   |||   | | |||| | |||  |    ||  | |     |     ||                                      
GTTGCAAGAGTTCTTCTGTTCGTTTACATGTTTTACCACGTATACTTGCACTATGATCAGgtaattgtaaat--gacagaattttcacttg-tcaggctctatagtct------gacatctaaatatatattttttctgtttgctccaactagtctggcattcgaaatt--------------------------------------