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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTGCAGAAGCTGATATCAAAAATTGGTGCTTTCAAGTCTTCCAAGGCCTTTCTTACATGCATCAGCGTGGTTACTTCCACCGCGATCTTAAGCCAGgtaattgatatagccttgaggtgtgagatacatagcttcaaacatctgctctgaagattagcaattctgagtttagtcactgtctttctaacaatccttgtttaatagtttgtcactgaatatgtatattgtgttggttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19110.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g02550.2 (Oryza sativa), 5'ss of exon 8
CTTTTTGCAGAAGCTGATATCAAAAATTGGTGCTTTCAAGTCTTCCAAGGCCTTTCTTACATGCATCAGCGTGGTTACTTCCACCGCGATCTTAAGCCAGgtaattgatatagccttgaggtgtgagatacatagcttcaaacatctgctctgaagattagcaattctgagtttagtcactgtctttctaacaatccttgtttaatagtttgtcactgaatatgtatattgtgttggttgttgcag
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CCCTTTTCAGAGACTGAAGTCCGAAATTGGTGTTTTCAGATATTTCAAGCTTTGAGTCACATGCATCAGCGTGGATATTTTCACCGCGACCTTAAGCC-------TGgtatggct----ggtgggctgt---tatttttaaac--ctggcatgctttctaatgctt--gagactgggagttgt--ttatgatgttc--tgttgtgcaatgcggcattaagtg------------------------