Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAGgtgttttataagcacctctccctattctttcttgtcatttactccaagtaaggtagtatgttaccattttagtgaagttttcgattttccctccag

Basic information

species Arabidopsis thaliana
transcript AT4G17150.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g40730.1 (Oryza sativa), 5'ss of exon 7
GTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAGgtgt--tttataagc-acctctccctattctttcttgtcatttactccaagtaaggtagt-atgttaccattttagtgaagttttcgattttccctccag
|||||  ||||||||||||||||||| ||| ||||||| | ||  || |||||| |||| ||||||||  ||  |||| ||||||  ||| |||   |||  |    | | |   | |  ||  |  | ||    |||  |    | | ||  |   |   || | |   |||  |  |||
GTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAGTTTGATATAATGGATCTTGATGTTGTTCAGgtgtgctttctaaattaccatttgtcagtttcaatggaaatcaaagctaacattggtgtttgcctaatcacctc--ttctgtctccttattttacaacag

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G081642_T04 (Zea mays), 5'ss of exon 7
GTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAGgtgt--tttataag----cacctctccctattctttcttgtcattt----actccaa-gtaaggtagtatgttaccattttagtgaagttttcgattttccctccag
|||||  ||||||| |||||||||||||| || ||||||||||  || |||||| | || |||||||| |||  | | | ||| |  ||  ||||     | || ||| ||   |   ||| ||  |    ||   ||   ||   |       |      |  ||| | |  | |   |        
GTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGGgtatacttcctaagacattatctttccataacataatttgacaccttggaaccttaatacaaaacaaagaagaattgaactcatgatggtcgcaaaactg-------

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G00770.1 (Glycine max), 5'ss of exon 8
GTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAGgtgttttataagcac-ctctccctattctttcttgtcatttactccaagtaaggtagtatgttaccattttagtgaagttttcgattttccctccag----
|||||| ||||||| ||||||||||||||  | ||| |||| ||||| |||||| |||||||| |||| || ||| |  |||| | |  ||      |  | | | || | | || |  ||||    || |   | || || || | | ||   | |  ||||  | ||             
GTTAAAATGGCTGTACAGTACATGCGGCGGGTTATTGAGAAGAAGGCAAAGTTTGATATTATGAATCTGAACTGTTTGCAGgtatgtattagttgtgcagttcttcttttgttttcttctttagaa-aaatggtgaagcatatttcaagttgtttaacatttttaaattattaaaattattt

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G02050.1 (Glycine max), 5'ss of exon 8
GTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAGgtgtt------ttataagcacctctccctattctttcttgtcatttactccaagtaaggtagtatgttaccattttagtgaagttttcgattttccctccag-
|||||| ||||||| || |||||||||||  | ||| |||| |||||||||||| |||| ||||| || || ||| |   |||||       || ||      | ||| ||     |  ||  | ||  ||    |         | |||  ||| |||   | || |  || ||  ||  |  
GTTAAAATGGCTGTACAATACATGCGGCGGGTTATTGAGAAGAAGGCGAAGTTTGATATCATGGACCTGAACTGTTTGCTGgtgtggattcattctacatttttttccataaagaatgatggaagtttttcttgatgtttctcacttttaaaattctag---aattattaatgttaacttaatt