Sequence
atgc intronic sequence ATGC exonic sequenceATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaaatgttctgcagatatctgaaaatttacaagagaaaatagttgtctagttactctcacacatgttcttttcacatgcaaagtatataaatcaa...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G16155.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 7
ATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaa-atgttctgcagatatctgaaaatttaca-agagaaaatagttgtctagttactctcacacatgttcttttcacatgcaa-agtatataaatcaa
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ATTACTCCAGCAAAGGATGGAAAACCTGTGCAGATTGAGCTCATTGATGCAAAAACAAAGGAACACAAAGAAACCCTCGAGgtaaaaactacatttaaacaatctttcagtccttgtacatagtatctccaattgcagttttactagccaactttttgttaagatacttcactcttcatat---
upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g23610.2 (Oryza sativa), 5'ss of exon 7
ATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaaatgttctgcagatatctgaaaatttacaagagaaaatagttgtctagttactctcacacatgttcttttcacatgcaaagtatataaatcaa-
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ATTACCCCAGCAAAGGATGGTAAACCCGTGTTGATTGAGTTAATTGATGCTAAGACAAAGGAACACAAGGAAACACTTGAGgtaatatattggataatcttgtttttactgtaggctttgtgctcttcttgttaaaagattgtta-agacatgcattttcagggtaggatttaaaagctttg
upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 7
ATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaaatgttctgcagatatct-----gaaaatttacaagagaaaat-agttgtcta-gttactctcacac-atgttcttttcacatgcaaagtatataaatcaa
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ATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAGgtagcttgatcttttccaaaaagcttttaggtttatctctttgttattttcaattgttaacatttctcccatgttatattgtttttgctctca---tatttaa-----
upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 7
ATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaaatgttctgcagatatctgaaaatttacaagagaaaatagttgtctagttactc-tcacacatgttcttttcacatgcaaagtatataaatcaa------
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ATCACGCCTGCAAGGGATGGAAAACCTGTCTTGATTGAACTTATTGATGCGAAAACCAAGGAGCCGAAAGACACGCTGGAGgtaacttaatctttttcaga-------aagcttttaggtttatatctctttgttattatcaattgtaaacatttctcccatgagagaagggagaaaattattagttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125269265|gb|EL283350.1|EL283350EST: TGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAG GTTGACGCTGCT
genomic: TGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaaat ... cttgttcaagGTTGACGCTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAGgtaacaaaatgttctgcagatatctgaaaatttacaagagaaaatagttgtctagttactctcacacatgttcttttcacatgcaaagtatataaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttcac