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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagtttttatacttaaattttcgaaatgacacattatttctacaccgaatttgaaatttttagcatgtttttgaatgtaccacag

Basic information

species Arabidopsis thaliana
transcript AT4G14360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G32470.1 (Glycine max), 5'ss of exon 7
AAGAAAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgt----cagtttttatacttaaattttcgaaatgacacattatt-----tctacaccgaatttgaaatttttagcatgtttttga---atgtaccacag---
 ||| ||  | || ||||||||||||||||| ||| | || ||||| ||||| ||||| || ||||||||||||||  | || ||  |   ||||  |||||     || |    | ||| |||| |  |  |    | |  ||       | |   | ||||||    |||  ||| ||| | |   ||| |   | |   
GAGACAAGAAAGTTTGGGTAATGAATGTTGTACCTCAAGATGGACCAAACACACTTAAGCTCATATATGACAGAGGCCTTATAGGAACTACTCATGACTGgtattgaagctagattgcttgaattataaatctattgcttctttgataactttccatgcatttgaggcattt--catttttataacctatgaatttctgatc

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G35120.1 (Glycine max), 5'ss of exon 6
AAGAAAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgt----cagtttttatacttaaattttcga---aatgacacattatt--tctacaccgaatttgaaatttttagcatgtttttgaatgtaccacag------
 ||| || ||||| ||||| ||||||||||| ||| | || ||||| ||||| ||||| || ||||||||||||||  | || ||  |   ||||  |||||     || |    | ||| |||| |  |   | ||   | ||  |    | |   | ||||||    |||  ||| ||| | |    |  |         
GAGACAAGGATGTTTGGGTGATGAATGTTGTACCTCAAGATGGACCAAACACACTTAAGCTCATATATGACAGAGGCCTCATTGGAACTACTCATGACTGgtattgaagctagattgcttgaattataaatctattggttctttgataacttgccgtgcatttgaggcattt--catttttataacctaataatttcttata

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 7
AAGAAAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagtttttatacttaaattttcgaaatgacacattatttctacaccgaatttgaaatttttagcatgtttttgaat-gtaccacag----------------------
 ||  |||||||| ||||| ||||||||||| |||   || ||||||||||| || || || ||||||||||||||  | || ||  |  | |||  |||||     || | |||| | ||| |  ||  | | |||  |  | || |   ||||| || |||   |||  ||||| |  |  |||                        
GAGGCAAAGATGTTTGGGTGATGAATGTTGTACCTCGTGATGGACCTAACACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgta----ttaaaacttgattttcctgaagcataaatt--tattgcatc---tttgatatctttt-tatgcatttgattcatttcaccttttttgtctcatttgatgatat

upper sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0049g01180.t01 (Vitis vinifera), 5'ss of exon 7
AAGAAAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagtttttatacttaaattttcgaaatgacacattatttctacacc--gaatttg--aaatttttagcatgtttttgaatgtaccacag-----------
| |  || ||||| ||||| ||||||||||| ||||| || ||||||||||| ||||||||||| |||||||||||| |||| ||| |  | |||| |||||  |  | |||  | || || |   |     |  ||||||  |  |   |  | ||  ||  |||| | |     |||     |  ||||           
AGGGCAAGGATGTTTGGGTGATGAATGTTGTCCCTGAAGATGGACCTAACACACTTAAACTGATCTATGACAGAGGTCTAATAGGCACTATCCATAACTGgtatgcatatattttgaagttattttat--gtattttatttgcaaccttagggtctggtaatatttttgaaaacagttgtcaaaaaaacagtttttgggaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086086|gb|DR381845.1|DR381845
EST:     ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTG                         GTGTGAAGCATTCTCGACATATCCAAGGACATATGATCTCCTCCATGCTTG
genomic: ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagttttt ... tgtaccacagGTGTGAAGCATTCTCGACATATCCAAGGACATATGATCTCCTCCATGCTTG
EST: gi|47831830|gb|CK121514.1|CK121514
EST:     ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTG                         GTGTGAAGCATTCTCGACATATCCAAGGACATATGATCTCCTCCATGCTTG
genomic: ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagttttt ... tgtaccacagGTGTGAAGCATTCTCGACATATCCAAGGACATATGATCTCCTCCATGCTTG
EST: gi|86079584|gb|DR375341.1|DR375341
EST:     ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTG                         GTGTGAAGCATTCTCGACATATCCAAGGACATATGATCTCCTCCATGCTTG
genomic: ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagttttt ... tgtaccacagGTGTGAAGCATTCTCGACATATCCAAGGACATATGATCTCCTCCATGCTTG
EST: gi|125072736|gb|EL137322.1|EL137322
EST:     ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTG                         GTGTGAAGCATTCTCGACATATCCAAGGACA
genomic: ACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagttttt ... tgtaccacagGTGTGAAGCATTCTCGACATATCCAAGGACA