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AATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGTCAGGCTTATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGgcaagtaggctattgagttcacagtttctgtgagattctcgtaagcatgttgatgagcttaacttggtagagtagttagcatgctgaatcatgtagtgtt...
species | Arabidopsis thaliana |
transcript | AT4G14210.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCGEST: gi|86074018|gb|DR369775.1|DR369775
genomic: CAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCG
EST: CAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCGEST: gi|86074021|gb|DR369778.1|DR369778
genomic: CAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCG
EST: CAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCGEST: gi|125199065|gb|EL214019.1|EL214019
genomic: CAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCG
EST: ATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGEST: gi|116473797|gb|EG516389.1|EG516389
genomic: ATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGG
EST: ATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCGEST: gi|125244532|gb|EL258617.1|EL258617
genomic: ATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCG
EST: ATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATEST: gi|86074020|gb|DR369777.1|DR369777
genomic: ATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCAT
EST: CAAAGAATGGATGGAAAAGCAG GGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCG
genomic: CAAAGAATGGATGGAAAAGCAGgcaagtaggc ... acttgtccagGGAGTACCTGAGCGCGTGACCGACGAGGTGTTTATTGCCATGTCAAAGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGTCAGGCTTATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGgcaagtaggctattgagttcacagtttctgtgagattctcgtaagcatgttgatgagcttaacttggtagagtagttagcatgctgaatcatgtagtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA