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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAAGGCCACTCTATGTATACACCCTGATAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGgtaagtgaattcaccatttttctggaaataaatccatcactgctacttcagctgccaccgacaaaacaccttgcattttacgaataactgcacaattgtataaatccacatttgctggcttaatctcctttgtcatgacaataaacag

Basic information

species Arabidopsis thaliana
transcript AT4G12780.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G12780.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G158872_T01 (Zea mays), 5'ss of exon 7
CAGGAAGGCCACTCTATGTATACACCCTGATAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGgtaagtgaat-tcaccatttttctggaaataaatccatcactgctacttcagctgccaccgacaaaacaccttgcattttacgaataactgcacaattgtataaatccacatttgctggcttaatctcctttgtcatgacaataaacag
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CAGGAAGGCAACACTGTGCATTCATCCTGATAAGGTGCAACAGAAAGGTGCAACACTTCAGCAGAAATATATTGCCGAAAAAGTCTTTGACATTCTTAAGgtacgtgaacgtgatcaacttatttggca-------acgtttaatatgataaatgagacaggtagaaa--ttcattttttaggagacacatactaattgtgacaccgta----------------------------------------