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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAAGGCCACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTCGACATGCTCAAGgtatgattcaacatctttctggaactaaatccatcactgctactttcagatgccaccaaaggaaccaaaaaaatccacttagactgcgtctcctcatggatgactagaagaaccgcacaattgtacaaaatccatattaactggcttgaactcttttctcatgacaataaacag

Basic information

species Arabidopsis thaliana
transcript AT4G12770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G12770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os12g36180.1 (Oryza sativa), 5'ss of exon 7
CAGGAAGGCCACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTCGACATGCTCAAGgtatgattcaacatctttctggaacta-aatccatcactgctactttcagatgccaccaaaggaaccaaaaaaatccacttagactgcgtctcctcatggatgactagaagaaccgcacaattgtacaaaatccatattaactggcttgaactcttttctcatgacaataaacag
 || ||||| ||  | || |||||||||||||| || |||||||| || || ||||| |||||||||||  |||||||||| || || ||  | || ||||| || |       |    |  |   | || |||| |  ||  | | | | |  |||   |  ||      ||  ||   |    |   |  |||  | | | |                                                                       
TAGAAAGGCAACATTGTGCATACATCCTGACAAGGTGCAGCAAAAGGGGGCAAATCTACAGCAGAAATATGTTGCCGAGAAGGTGTTTGATCTCCTTAAGgtgtg-tatgctgccaaaatatattcacaaaccataatagcagcatgctgct-tcacactaacaattggtcaa--ccgtatgtttttatttcccttttagttta-----------------------------------------------------------------------

upper sequence: AT4G12770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g25320.1 (Oryza sativa), 5'ss of exon 7
CAGGAAGGCCACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTCGACATGCTCAAGgtatgattcaacatctttctggaactaaatccatcactgctactttcagatgccaccaaaggaaccaaaaaaatccacttagactgcgtctcctcatggatgactagaagaaccgcacaattgtacaaaatccatattaactggcttgaactcttttctcatgacaataaacag
|||||| || ||  | || || |||||||| || || |||||||| || || ||||| || |||||||||||||| || || || |||||| | || |||||||||||       |||      |||||| |  |  | ||   ||| ||     | ||        |    ||||    |  || |   |  |    |   ||| | | ||| |                                                           
CAGGAAAGCAACATTATGCATCCATCCTGATAAGGTGCAGCAAAAGGGTGCAAATCTTCAACAGAAATACATTGCAGAAAAGGTGTTCGACCTTCTGAAGgtatgatttg-----ttt-----gctaaatgc--cgtt-ctggcttctgacaagtctaat----ttgagtttatccctgcactctacaagttatttgagcacacttgcataactgtg---------------------------------------------------------