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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGgtaatcaaactatatatgaatatatgattgctaagtgttgttgttttgttcgctccgtggccatacctgatttggtatcgttgccttgcaaaattgatcag

Basic information

species Arabidopsis thaliana
transcript AT4G12590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G12590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G44410.1 (Glycine max), 5'ss of exon 8
CCATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGgtaatcaaactatatatgaatatatgattgctaagtgttgttgttttgttcgctccgtggccatacctgatttggtatcgttgccttgcaaaattgatcag
|  | ||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||   | |  |    |   | |   | |  |||   |   |  ||         | ||    | | ||| ||| |       | || |       ||   
CTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGgtacaaatatgagtggtatttttcataattttaaagatcaatcattgaaaattatcatgtgattccatgacttgttgatccccctttcccccggccatac-

upper sequence: AT4G12590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 5
-CCATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGgtaatcaaactatatatgaatatatgattgctaagtgttgttgttttgttcgctccgtggccatacctgatttggtatcgttgccttgcaaaattgatcag-
 |  | ||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||     || | |||||| |   | | |    | | ||  |  |||      ||  |      |  | |||  ||||  ||  ||||   | |        
GCTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAggtacaattacaa-atatgagtggtttactctagatttttcataattttgaatatcaatcattgaaaattatt--gtatgattcacttgttgactcccctccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163967977|gb|ES064892.1|ES064892
EST:     ATTTGATGCATCAAAG                         AGTCTGGGTGCAGAGAAGGATGGTTTAGACATAATCCAGCACGAATGGGCA
genomic: ATTTGATGCATCAAAGgtaatcaaac ... aattgatcagAGTCTGGGTGCAGAGAAGGATGGTTTAGACATAATCCAGCACGAATGGGCA
EST: gi|86079343|gb|DR375100.1|DR375100
EST:     ACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAG                         AGTCTGGGTGCAGAGAAGGATGGTTTAGACATAATCCAGCACGAATGGGCA
genomic: ACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGgtaatcaaac ... aattgatcagAGTCTGGGTGCAGAGAAGGATGGTTTAGACATAATCCAGCACGAATGGGCA
EST: gi|164109259|gb|ES078571.1|ES078571
EST:     ACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAT                         AGTCTGGGTGCAGAGAAGGATGGTTTAGAC
genomic: ACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGgtaatcaaac ... aattgatcagAGTCTGGGTGCAGAGAAGGATGGTTTAGAC