Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGgtaacaaaaacaaaaagacctattgaattttgctttgtactttgataaattttgatacaaaaatgtttatgtttctttag

Basic information

species Arabidopsis thaliana
transcript AT4G12430.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 6
TTTTAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGgtaacaaaaacaaaaagacctattgaattttgctttgtactttgataaattttgatacaaaaatgtttat--gtttctttag------------------------------------
||||||| |||||||||| |  |  | ||  ||  |||| |||||||| |||||||| ||||| || || ||||||||||||||||| || || || || ||||  |  |   |  |  || |||  || |  | |  | | |  | |    | |||  | | || |||   ||||   ||                                     
TTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatcatggattgtacttttgctttcttatcta-attctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag

upper sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 6
TTTTAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGgtaacaaaaacaaaaagacctattgaattttgctttgtactttgataaatt-ttgatacaaaaatgtttat--gtttctttag------------------------------------
||||||| ||||||| || |  |  | ||  ||  ||||||||||||| |||||||| ||||| || || ||||||||||||||||| || || || || ||||  |  |   |  |  || |||   |||| | | || ||  ||  ||   | |||  | | || |||   ||||   ||                                     
TTTTAGAGCCCTTGTCGAAACCACTAGAGGAATTGAAGGTGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatcatggattgttcttttg--ctttgttatctaattctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag