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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGgtaaaaagtgacactttctttcatctttagatacttggattctaagtcatgttttgttaaacctttgaactcttttgtggatcag

Basic information

species Arabidopsis thaliana
transcript AT4G10960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 6
-----------------GTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGgtaa-aaagtgac--actttctttcatctttagatacttggattctaagtcatgttttg---ttaaacctttgaactcttttgtggatcag---------
                 ||||||| || || || || ||||||||||| |||||||||||| | || ||||||   ||||||||||  ||||| |||||||||| | | | |   |  || ||      ||| |||  |  ||| | |      |  ||    | ||| ||    |  |||| |  | ||          
TCATGGTGTATTTACAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaataatgtatctttttctggtcttatatatgtcaattgtcaacataatcctggctgtcaactttaatgccattttttaaagcattttgttgtt

upper sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G43540.1 (Glycine max), 5'ss of exon 7
GTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGgtaa-aaagtgac--actttctttcatctttagatacttggattctaagtcatgttttg---ttaaacctttgaactcttttgtggatcag---------
||||||| || || || || ||||||||||| |||||||||||| | || ||||||   ||||||||||  ||||| |||||||||| | | | |   |  || ||      ||| |||  |  ||| | |      |  ||    | ||| ||    |  |||| |  | ||          
GTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaataatgtatctttttctggtcttatatatgtcaattgtcaacataatcctggctgtcaactttaatgccattttttaaagcattttgttgtt

upper sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGgtaaaaagtgacactttctttcatctttagatacttggattctaagtc----atgttttgttaaacctttgaactcttttgtg-gatcag----------
| ||||||||||||||  | ||||||||||| |||||||| ||| | || |||||||  || ||||| || ||||| ||||||||    |           |||| |  ||  || | |   ||||   |     |         |||   ||||||  |||| |  || |            
GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAGgtgttgaacagtttaacatttcctactttaattcctctcttctggttttccaactcccaaagaaaagattgaacctttttctaagaactttttatttcta