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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatcctgtataatctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaaaccttttcacttacgcttctcgcattgcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G04850.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 5'ss of exon 6
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatcctgtataatctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaaaccttttcacttacgcttctcgcattgcttgcag
|||||||| ||||||||||| ||||| ||||||||||||||||| ||  ||||||| || || || |||||   | ||| |       | | ||  ||||| ||   | |||    | ||| |  |  || ||| | ||   | | || | | | |       |    |  || |  |   |    ||||    | |                                                              
CTTCTTGCTGAGAAAGGTGAACTCCCAACAAGATTTGGCTCAGCTACACTGGGAATCCTCCTCCTGCAGgt---gattagctgaatctagccct--cttctttttcttcactg---aactggccctt-aatagaaaagtttctttctagtggtgtatgctccattaattcctggatgtcttttgctgatacttcacag-------------------------------------------------------------

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 6
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgt-tctgctt---atcctgtataatctctatcttctattctatgactttttatctgacattccaaaagatatgtca-atatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaaaccttttcacttacgcttctcgcattgcttgcag
|||||||| ||||||||||| || || ||||||||||| ||||| ||  ||||||||||||| || ||||| || | |      ||| || | | ||   | || |   ||| | | || ||   |   |||||    | ||  |   ||  |||   | |   | ||| ||| |    | |                                                                                  
CTTCTTGCCGAGAAAGGTGAACTTCCAACAAGATTTGGTTCAGCTACACTGGGAATTCTTCTCCTGCAGgtatccgatcgaagccctatacattttcctgcctccaaattatcattattcatg-aatcctccaaggagtgtgagatgcattaattcctggatgtattctgctgatactcacag---------------------------------------------------------------------------------

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 7
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatcctgtataatctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaaaccttttcacttacgcttctcgcattgcttgcag
||||||||||||| ||||||||| |||||||||||||||||||||||  | ||||| |||||| | |||||| |   | || |  |   |  |||  ||  | |||                |||||   ||| |||| |||| |   |||   ||| |||  |   ||| | | || ||||     |||                                                                     
CTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAGgtttt---tgtcttaaactcttactaggttacagtct----------------cattctccaag-tatg-caattt---tttataaaaggaaaatgtggttgttagaactcattttgtatataa------------------------------------------------------------------

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 8
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatcctgtataatctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaaaccttttcacttacgcttctcgcattgcttgcag
||||||||||||| ||||||||| ||||| |||||||| ||||||||  | ||||| |||||| | |||||| |   | || |  |   |  ||   ||  | |||   | |   ||| | | |||    |  | |    ||| || || |  |||      ||| | || |   | || | |                                                                            
CTTCTTGCAGAGAGAGGTGAGCTTCCTACGAGATTTGGTTCAGCAACTCTCGGAATACTTCTTTTGCAGgtttt---tgtcttacactcttgcttggttacagtctc--attaagtatgtaatattt---atcacaaaaaaatgtggatgttagaa------ctcatattgtatgagtttacc----------------------------------------------------------------------------

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatc--ctgtataa-tctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaa-accttttcacttacgcttctcgcattgcttgcag
|||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||| ||||| |||||||| |   |||     ||  ||| ||| |||| ||   | | |   |  |||       ||  | |     | | | | |  |||  | |        |   | |  |     |||| |||  || |||           |||| |    ||||  | || |  |||  | |  | || || |   |  ||||||
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtacgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttatatttccttttacttttcattctgaa--------tttggctagggtgggtcatgcaaagtaggca--------tcacaaagtatc-aagtcaataacatttttggattcccactgcttga--tatttgcag