1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGTAGCTGACAGAGTCAATCTTGGTCTCATCCCGAGTAGCGAAGGAAGCTGGGTCACAGCTATTCAGGCATTAAGgtgattttactttccttaaaacttattcttaactacaagaaccaggagcataaaatctggaacaagttttaaggttcagtctctccaaaagatataatct...
species | Arabidopsis thaliana |
transcript | AT4G04670.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGGCATTAAG GCCTGAGGGAGGAATACTCCATGTGCACGGAAACGTCAAGGACTCAGATGAEST: gi|116474296|gb|EG516888.1|EG516888
genomic: ATTCAGGCATTAAGgtgattttac ... gaatttgtagGCCTGAGGGAGGAATACTCCATGTGCACGGAAACGTCAAGGACTCAGATGA
EST: CTCATCCCGAGTAGCGAAGGAAGCTGGGTCACAGCTATTCAGGCATTAAG GCCTGAGGGAGGAATACTCCATGTGCACGGAAACGTCAAGGACTCAGATGA
genomic: CTCATCCCGAGTAGCGAAGGAAGCTGGGTCACAGCTATTCAGGCATTAAGgtgattttac ... gaatttgtagGCCTGAGGGAGGAATACTCCATGTGCACGGAAACGTCAAGGACTCAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTAGCTGACAGAGTCAATCTTGGTCTCATCCCGAGTAGCGAAGGAAGCTGGGTCACAGCTATTCAGGCATTAAGgtgattttactttccttaaaacttattcttaactacaagaaccaggagcataaaatctggaacaagttttaaggttcagtctctccaaaagatataatct
- - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaagat