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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTAGTCCTCGCCCTCTAAGTAGCTCTCCTGGATCTATATCACCTGGCATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaattaagacctcttaatagttttcttctcttattcttttaagacctgaaagattattttggttgttcag

Basic information

species Arabidopsis thaliana
transcript AT4G03110.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125131977|gb|EL174303.1|EL174303
EST:     CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAG                         GTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGG
genomic: CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaa ... ggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGG
EST: gi|124808374|gb|EH894538.1|EH894538
EST:     TTGGTTTGAGTTCTGTGGTTCAAACCGAAG                         GTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGG
genomic: TTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaa ... ggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGG
EST: gi|124753304|gb|EH843434.1|EH843434
EST:     CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAG                         GTCCAGAAGGTGCAAATCTGTTTATCTA
genomic: CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaa ... ggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTA